View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10601_low_22 (Length: 206)
Name: NF10601_low_22
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 41590858 - 41591033
Alignment:
| Q |
17 |
agaaactagctattaaaattaatgaaagacttatatattgctttgaacaatctcaggatgcattaagacaaactaaaacctttaaaattatggtgctagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590858 |
agaaactagctattaaaattaatgaaagacttatatattgctttgaacaatctcaggatgcattaagacaaactaaaacctttaaaattatggtgctagt |
41590957 |
T |
|
| Q |
117 |
tcaagaaaaagactaatttcaatgatattttttaaattaagagactaattgtctagagtgtttggttccacttctt |
192 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41590958 |
tcaagaaaaagactaatttcaacgatattttttaaattaagagactaattgtttagagtgtttggttccacttctt |
41591033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 41584262 - 41584429
Alignment:
| Q |
18 |
gaaactagctattaaaattaatgaaagacttatatattgctttgaacaatctcaggatgcattaagacaaactaaaacctttaaaattatggtgctagtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41584262 |
gaaactagctattaaaattaatgaaagacttatatattgctttgaataatcccaggatgcattaggacaaactaaaacctttaaaattatggtgctagtt |
41584361 |
T |
|
| Q |
118 |
caagaaaaagactaatttcaatgatattttttaaattaagagactaattgtctagagtgtttggttccacttctt |
192 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
41584362 |
caagaaaaagactattttcatcgatattttttaatttaag-------ttgtctagactgtttggttccacttctt |
41584429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 41571844 - 41572016
Alignment:
| Q |
18 |
gaaactagctattaaaattaatgaaagacttatatattgctttgaacaatctcaggatgcattaagacaaactaaaacctttaaaattatggtgctagtt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41571844 |
gaaaatagctattaaaattaatgaaagacttatatattgctttgaataatctc--gatgcattaggacaaactaaaacttttaaaattatggtgctagtt |
41571941 |
T |
|
| Q |
118 |
caagaaaaagactaatttcaatgatattttttaaattaagagactaa-ttgtctagagtgtttggttccacttctt |
192 |
Q |
| |
|
||| |||||||||| ||||| |||||||||||| || ||||| ||| |||| ||| |||||||||||||||||| |
|
|
| T |
41571942 |
caa-aaaaagactattttcatcgatattttttaatttgagagattaagctgtcgagactgtttggttccacttctt |
41572016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University