View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_4 (Length: 435)
Name: NF10601_low_4
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 45973762 - 45974174
Alignment:
| Q |
17 |
atcaacccatttatgtttaaagacattcatcgtgttaaagatggtgagaaacacaaggagaaagggaggag---tttgagattccaaatttttacagaag |
113 |
Q |
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| T |
45973762 |
atcaacccatttatgtttaa-gacattcatcgtgttgaagatggtgagaaacacaaggagaaagggaggaggagtttgggattccaaatttttacagaag |
45973860 |
T |
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| Q |
114 |
aacgtgtttgagcaggcaaatattctgtgtagtgggtttaacgtggaataaattagagaaggcaaatat----------tttaatcagatggttatgttt |
203 |
Q |
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| T |
45973861 |
aacgtgttt---------aatattctgtgcagtgggtttaacgtggaataaattagagaaggcaaatatataccgttattttaatcagatggttatgttt |
45973951 |
T |
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| Q |
204 |
cgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccacca |
303 |
Q |
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| T |
45973952 |
cgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtactcttgtgttttctttcccaccacca |
45974051 |
T |
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| Q |
304 |
ccaccattggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcacc |
403 |
Q |
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| T |
45974052 |
ccaccactggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagttcacaaccaaccacattacatcacc |
45974151 |
T |
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| Q |
404 |
atcacattcacgttttctctgtg |
426 |
Q |
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| T |
45974152 |
atcacattcacgttttctctgtg |
45974174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 10946447 - 10946384
Alignment:
| Q |
187 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
250 |
Q |
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| T |
10946447 |
atcagatggttttgtattgtttaactgtgtgactgcgtcattttaatgactgcagtgaatcaca |
10946384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 29175904 - 29175841
Alignment:
| Q |
187 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
250 |
Q |
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| T |
29175904 |
atcagatggttatgttttgtttgaatgtgtgactgtgtcattttactgactgcagtgagtcaca |
29175841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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