View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_5 (Length: 432)
Name: NF10601_low_5
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37533546 - 37533769
Alignment:
| Q |
1 |
ttatcaattagtactacgaactagatgaggtgaagattaatcaacactgaatattgttgaaacttgaaaagcaaaatgaagagataggagacacgaatta |
100 |
Q |
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| T |
37533546 |
ttatcaattagtactacgaactagatgaggtgaagattaatcaacactgaatattgttgaaacttgaaaagcaaaatgaagagataggagacacgaatta |
37533645 |
T |
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| Q |
101 |
caaggtgtgaaaacgaccatggctataatagaaaaggaagaatgagagagacctcacagttaatgacnnnnnnnctggggactactaattttgggattgt |
200 |
Q |
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| T |
37533646 |
caaggtgtgaaaacgaccatggctataatagaaaaggaagaatgagagagacctcacagttaatgacaaaaaaactggggactactaattttgggattgt |
37533745 |
T |
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| Q |
201 |
gattgtcacactcttcttatatac |
224 |
Q |
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| T |
37533746 |
gattgtcccactctttttatatac |
37533769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 37534174 - 37534289
Alignment:
| Q |
299 |
tagtagtatcacaaatcacaatgatcattttcttgtgataacttggatcgatgtagtagtagttttttggatgac-aaataggactcatatcgattaaat |
397 |
Q |
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| T |
37534174 |
tagtagtatcacaaatcacagtgatcattttcttgtgataacttggatggatgtagtagtagttttttggatgacaaaataggactcatatcgattaaat |
37534273 |
T |
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| Q |
398 |
atttgcaataaatact |
413 |
Q |
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| T |
37534274 |
atttgcaataaatact |
37534289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 37534078 - 37534135
Alignment:
| Q |
235 |
cattcacattttcttcacgtttaaggggacttcattttgattgtggaccactactcca |
292 |
Q |
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| T |
37534078 |
cattcacattttcttcacgtttaaggggacttcattttgattgtggaccactactcca |
37534135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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