View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10601_low_6 (Length: 388)
Name: NF10601_low_6
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 9235827 - 9236197
Alignment:
| Q |
1 |
ataaaaaatcagtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235827 |
ataaaaaatcagtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctcttt |
9235926 |
T |
|
| Q |
101 |
atagccatgatacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235927 |
atagccatgatacttggtatgtaccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattga |
9236026 |
T |
|
| Q |
201 |
aagaactcgagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttagatatggatgtcacgaaacgattctgtatgagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9236027 |
aagaactcgagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttagatatggatgtcacaaaacgattctgtatgagaa |
9236126 |
T |
|
| Q |
301 |
gatgaacatacttctccctgttcttactatccacaacaaggctttctcccccagggcagagctcaatcaat |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9236127 |
gatgaacatacttctccctgttcttactatccacaacaaggctttctcccccagggcagagctcaatcaat |
9236197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 9247703 - 9248061
Alignment:
| Q |
11 |
agtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccatga |
110 |
Q |
| |
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||||||||| ||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
9247703 |
agtgaagatgaaggtaaagacaaagtgatcccataagatcagtatcctacataccttccaaaaccaagatatctgacgatcgttctctttatagccatga |
9247802 |
T |
|
| Q |
111 |
tacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactcga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||| ||| ||||||||| |||||||| | |
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|
| T |
9247803 |
tacttggtatgtgccttccaatcttcaacagaaatgtcattttcactcccatgcagcatccaatcaaaatcttcatggtgtaaaaattggaagaactcta |
9247902 |
T |
|
| Q |
211 |
gccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttagatatggatgtcacgaaacgattctgtatgagaagatgaacata |
310 |
Q |
| |
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| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||| | ||||| |||||||||||||| |
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| T |
9247903 |
gacttgagcaagatataatatcagcaaaaccttgggcaaaatgtgatatctgctcagatatggatgtcacaaaacgactttgtataagaagatgaacata |
9248002 |
T |
|
| Q |
311 |
cttctccctgttcttactatccacaacaaggctttctcccccagggcagagctcaatca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9248003 |
cttctccctgttcttactatccacaacaaggctttctccaccagggcagagctcaatca |
9248061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 9265918 - 9266276
Alignment:
| Q |
11 |
agtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccatga |
110 |
Q |
| |
|
||||||||| ||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| || |
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| T |
9265918 |
agtgaagatgaaggtaaagacaatgatatcccataagatcagtatcctacataccttccaaaaccaagatatctgacgatcgttctttttatagccaaga |
9266017 |
T |
|
| Q |
111 |
tacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactcga |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||| | |
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|
| T |
9266018 |
tacttggtgtgtgccttccaatcttcaacattaatgtcattttcactcccatgcagcttccaatcaaaatcttcatggtctaaaaattgaaagaactcta |
9266117 |
T |
|
| Q |
211 |
gccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttagatatggatgtcacgaaacgattctgtatgagaagatgaacata |
310 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
9266118 |
gccttgagcaagatataatatcagcaaaaccttgggcaaaatgtgatacctgcttagatatggatgtcacaaaacgattctgtataagaagatgaacata |
9266217 |
T |
|
| Q |
311 |
cttctccctgttcttactatccacaacaaggctttctcccccagggcagagctcaatca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
9266218 |
cttctccctgttcttactatccacaacaaggctttctccaccagggcagagcttaatca |
9266276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 9256088 - 9256443
Alignment:
| Q |
11 |
agtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccatga |
110 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| | |
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|
| T |
9256088 |
agtgaagataaag---aagacaatgtgattccataagatcagtgtcctacataccttccaaaaccaagatatctgacaatcattctttttatagccacgg |
9256184 |
T |
|
| Q |
111 |
tacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactcga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| | |
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|
| T |
9256185 |
tacttggtatgtgccttccaatcttcaacagaaatggcattttcactcccatgcagcatccaatcaagatcttcaaggtctaaaaattgaaagaactcta |
9256284 |
T |
|
| Q |
211 |
gccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttagatatggatgtcacgaaacgattctgtatgagaagatgaacata |
310 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||| |||| |||||||||||||| ||||||| |||||| |
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|
| T |
9256285 |
gccttgagccagatataatatcagcaaaaccctcggcaaaatgcgatacctgctcagatatggatttcacaaaacgattctgtataagaagatcaacata |
9256384 |
T |
|
| Q |
311 |
cttctccctgttcttactatccacaacaaggctttctcccccagggcagagctcaatca |
369 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||| || |||| |||||||||||||| |
|
|
| T |
9256385 |
tttctccctgttcttactattcacgacaatgctttccccaccagagcagagctcaatca |
9256443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 61 - 330
Target Start/End: Original strand, 55698886 - 55699161
Alignment:
| Q |
61 |
ataccttccaaaaccaagatatctgatgatcattctctttatagccatgatacttggtatgtgccttccaatcttcaacagaaatggcattctcactgcc |
160 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| | ||| ||||||||| ||||| || ||||| ||||||||||| || |||||||||| ||||| || |
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| T |
55698886 |
atacctcccaaaaccaagatatctgaatatctgtgtctgtatagccattatactcagtgtgtgctttccaatcttcgacggaaatggcatcttcactccc |
55698985 |
T |
|
| Q |
161 |
atgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaa------ctcgagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgt |
254 |
Q |
| |
|
| |||||||| |||||| ||||||| |||||| ||||||||| || |||| |||| | || | ||| ||||||||||||| |||||| ||| |
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|
| T |
55698986 |
acgcagcatccaatcaagatcttcagactctaaactttgaaagaagaactgctggagctttgaacttgaaagaatctcagcaaaacctttggcaaagtgt |
55699085 |
T |
|
| Q |
255 |
gatacctgcttagatatggatgtcacgaaacgattctgtatgagaagatgaacatacttctccctgttcttactat |
330 |
Q |
| |
|
|| ||||||| || ||||||||| || ||||||| || ||| ||||||| |||||||||| ||||||||||||||| |
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|
| T |
55699086 |
gaaacctgctcagctatggatgttacaaaacgatcctttataagaagatcaacatacttcaccctgttcttactat |
55699161 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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