View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10601_low_8 (Length: 293)
Name: NF10601_low_8
Description: NF10601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10601_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 28888252 - 28887981
Alignment:
| Q |
1 |
atattagagttacttcttcagcagcaagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28888252 |
atattagagttacttcttcagcagcaagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggcc |
28888153 |
T |
|
| Q |
101 |
ttttccaatgtctgtactaaaacactggagcgaattggattccacattttctcccttagaattcaaggtctggaagacagatgagagtgaaagagaggca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28888152 |
ttttccaatgtctgtactcaaacactggagcgaattggattccacattttctcccttagatttcaaggtctggaagacagatgagagtgaaagagaggca |
28888053 |
T |
|
| Q |
201 |
atgcttctgagggatgcacttgggctcttttttcccccaaagggaaagtaaatcaatatgaagggaaatcac |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28888052 |
atgcttctgagggatgcacttgggctctttttccccccaaagggaaagtaaatcaatatgaagggaaatcac |
28887981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 28897891 - 28897647
Alignment:
| Q |
26 |
aagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactaaaacac |
125 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||| | ||||| |||||| ||||||||| ||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
28897891 |
aagaaagggagtggagagtcctgatattcctatttggcactgttcgggtatttgtggtagtggaacaagagggccttttccaatgtctatactcaaacag |
28897792 |
T |
|
| Q |
126 |
tggagcgaattggattccacattttctcccttagaattcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggatgcacttgggc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28897791 |
tggagcgaattggattccacattttctcccttagacttcaaggtctggaagacaggtgaaagtgaaagagaggcaatgcttctgagggatgcacttaagc |
28897692 |
T |
|
| Q |
226 |
tcttttttcccccaaagggaaagtaaatcaatatgaagggaaatca |
271 |
Q |
| |
|
| |||||| ||| || | |||||||| |||| |||||||||||||| |
|
|
| T |
28897691 |
tgtttttt-ccctaatgtgaaagtaagtcaaaatgaagggaaatca |
28897647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 28912396 - 28912152
Alignment:
| Q |
26 |
aagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactaaaacac |
125 |
Q |
| |
|
||||||||||| ||||| | ||||||| | |||||||| ||||| ||| ||||||| ||| ||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
28912396 |
aagaaagggagcggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtggaacaagagggccttttccaatgactgtactcaaacac |
28912297 |
T |
|
| Q |
126 |
tggagcgaattggattccacattttctcccttagaattcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggatgcacttgggc |
225 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28912296 |
tggagtgaattggattccacatatgctcccttagacttcaaggtctggaagacgggcgagagtgaaagagaggcaatgcttctgagggatgcacttaagc |
28912197 |
T |
|
| Q |
226 |
tcttttttcccccaaagggaaagtaaatcaatatgaagggaaatca |
271 |
Q |
| |
|
||||||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
28912196 |
tcttttttccct-aatgtcaaagtaaatcaaaatgaagggaaatca |
28912152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 28921892 - 28921683
Alignment:
| Q |
26 |
aagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgtactaaaacac |
125 |
Q |
| |
|
||||||||||||||||| | ||||||| | |||||||| ||||| ||| ||||||| ||| ||||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
28921892 |
aagaaagggagtggagagtattgatattcctatttggtactgttcgggtgttcgtggctgtggaacaagagggccttttccaatgactgtactcaaacac |
28921793 |
T |
|
| Q |
126 |
tggagcgaattggattccacattttctcccttagaattcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggatgcacttgggc |
225 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
28921792 |
tggagtgaattggattccacatatgctcccttagacttcaaggtctggaagacgggtgagagtgaaagagaggcaatgcttctaagggatgcacttaagc |
28921693 |
T |
|
| Q |
226 |
tcttttttcc |
235 |
Q |
| |
|
|||||||||| |
|
|
| T |
28921692 |
tcttttttcc |
28921683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 28930970 - 28930753
Alignment:
| Q |
16 |
cttcagcagcaagaaagggagtggagaatcctgatatttccatttggtattgttcaggtattcgtggtagtgaaacaaaagggccttttccaatgtctgt |
115 |
Q |
| |
|
||||||||| |||||||||||||| || | ||||| ||||||||||| ||||||| |||||||| ||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
28930970 |
cttcagcagaaagaaagggagtggtgagttctgatgtttccatttggcattgttcgggtattcgaggtggtggaacaaaagggcctttttcaatgtctgt |
28930871 |
T |
|
| Q |
116 |
actaaaacactggagcgaattggattccacattttctcccttagaattcaaggtctggaagacagatgagagtgaaagagaggcaatgcttctgagggat |
215 |
Q |
| |
|
||| |||| ||||||||||| | |||||| |||||||||| | | ||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
28930870 |
actcaaacgctggagcgaat---ctgccacatcttctcccttaaactacaaggtctggaagacaggtgagagtgaaagagaggcaatacttttgagggat |
28930774 |
T |
|
| Q |
216 |
gcacttgggctcttttttcccc |
237 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
28930773 |
gcactt-agctcttttttcccc |
28930753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University