View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_1 (Length: 461)
Name: NF10602_high_1
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 200 - 426
Target Start/End: Original strand, 39443675 - 39443907
Alignment:
| Q |
200 |
cgagttttaagatttgttgtcactctatttgatctttgactagtttttt-gacacatttgaagaannnnnnngagctttgaagagtcatttaagaatgat |
298 |
Q |
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| T |
39443675 |
cgagttttaagatttgttgtccctctatttgatctttgactagtttttttgacacatttgaagaatttttttgagctttgaagagtcatttaagaatgat |
39443774 |
T |
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| Q |
299 |
agtgacatgtttatatatatttttggtaaatgaataaaatgatagtagtaatatttattgaaaactcaggtttggaatcccaaacacacatatttgtgat |
398 |
Q |
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| T |
39443775 |
agtgacatgtttatatatatttttggtaaatgaataaaatgatagtagtaatatttattgaaaactcaggtttggaatcccaaacacacacgtttgtgat |
39443874 |
T |
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| Q |
399 |
ttaaca-----attttgatatttttatcaattg |
426 |
Q |
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| T |
39443875 |
ttaacaattttattttgatatttttatcaattg |
39443907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 39443481 - 39443628
Alignment:
| Q |
6 |
agaagcaaaggaggttatataaaaactacattgttgtatatgactggcttggtctgaaagtcaagcatcaggatttggaaaaaatattcgaacttctgtc |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39443481 |
agaagccaaggaggttatataaaaactacattgttgtatatgactggcttggtctgaaagtcaagcatcaggatttggaaaaaatattcgaacttctgtc |
39443580 |
T |
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| Q |
106 |
atcaatttatacaagtacttggctcttcttaattcaaagatgttttcc |
153 |
Q |
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| T |
39443581 |
atcaatttatacaagtacttggctcttcttaattcaaagatgttttcc |
39443628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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