View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_12 (Length: 345)
Name: NF10602_high_12
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 39400844 - 39400510
Alignment:
| Q |
1 |
aatttcagctatttcttctctgtccctggacttacttacatcaatgtaaccagctactacaacaaggttgaccagttctcttagtttgctgttcttacca |
100 |
Q |
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| T |
39400844 |
aatttcagctatttcttctctgtccctggacttacttacatcaatgtaaccagctactacaacaaggttgaccagttctcttagtttgctgttcttacca |
39400745 |
T |
|
| Q |
101 |
tagatttctaccaacccggtaatgtttttcactcggtctagccttgccatggagaatattatgggctttgaccgatctttcagcgtaccacttgcaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400744 |
tagatttctaccaacccggtaatgtttttcactcggtctagccttgccatggagaatattatgggctttgaccgatctttcagcgtaccacttgcaacca |
39400645 |
T |
|
| Q |
201 |
tatcaacaaaaatcaatacatcagctaaatactctcaccatttttaccttgtcatattgacaacttcacatatgaaaaaagtgaggtgttgcataacatt |
300 |
Q |
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| T |
39400644 |
tatcaacaaaaatcaacacatcagctaaatactctcaccatttttaccttgtcatattgacaacttcacatatgaaaaaagtgaggtgttgcataacatt |
39400545 |
T |
|
| Q |
301 |
tcttacaactgctttaaatattactatcccctatg |
335 |
Q |
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| T |
39400544 |
tcttacaactgctttaaatattactatcccttatg |
39400510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 44515146 - 44515309
Alignment:
| Q |
11 |
atttcttctctgtccctggacttacttacatcaatgtaaccagctactacaacaaggttgaccagttctcttagtttgctgttcttaccatagatttcta |
110 |
Q |
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|||||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||||||||||| || | ||||||||||||| ||||| |||||| |
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| T |
44515146 |
atttcttctctgtcactggacttcttcacatcaatataaccagctactacgacaaggttgaccagttccctcaatttgctgttcttagcatagctttcta |
44515245 |
T |
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| Q |
111 |
ccaacccggtaatgtttttcactcggtctagccttgccatggagaatattatgggctttgaccg |
174 |
Q |
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|||| || || |||||||| |||| ||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
44515246 |
ccaaaccagttatgtttttaactctgtcaagccttgccatggagaagattataggctttgaccg |
44515309 |
T |
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