View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_high_13 (Length: 336)
Name: NF10602_high_13
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 4682183 - 4681865
Alignment:
| Q |
6 |
acaaaaagttaaaacaaacaaacaataattgataacaccagaggtctaacacaagtggttggtgcggagtgtgtgttgatattgtaaatattatagtact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4682183 |
acaaaaagttaaaacaaacaaacaataattgataacaccagaggtctaacacaagtggttggtgcggagtgtgtgttgatattgtaaatattatagtact |
4682084 |
T |
|
| Q |
106 |
tatacatggttaattaccataacaaaacaatcatgaaagtgtaatcgaagtagcgatgctgctaaacgcggatctttcaaaactgctaccgccacgttat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4682083 |
tatacatggttaattaccataacaaaacaatcatggaagtgtaatcgaagtagcgatgctgctaaacgcggatctttcaaaactgctaccgccacgttat |
4681984 |
T |
|
| Q |
206 |
gtctcacaatgtcttcagctaagggacatttttctttgtagtactcatgaacaagaagttcactaccccttagagtgtgaatattggacaaaatagtaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4681983 |
gtctcacaatgtcttcagctaagggacatttttctttgtagtactcatgaacaagaagttcactaccccttagagtgtgaatattggacaaaatagtaat |
4681884 |
T |
|
| Q |
306 |
taagataagtaatagtctc |
324 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4681883 |
taagataagtaatagtctc |
4681865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University