View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_18 (Length: 313)
Name: NF10602_high_18
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 11027177 - 11026998
Alignment:
| Q |
18 |
atctgtggctgttcatctgtttnnnnnnntttaaaatgggtaaacctttgcagtacaaaatgtcaacatcaagaaaattaacttaacatctatgagtnnn |
117 |
Q |
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| T |
11027177 |
atctgtggctgttcacctgtttaaaaaaaattaaaatgg-taaacctttgcagtacaaaatgtcaacatcaagaaaattaacttaaaatctatgagtaaa |
11027079 |
T |
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| Q |
118 |
nnnnccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
198 |
Q |
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| T |
11027078 |
aaaaccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
11026998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 11026960 - 11026882
Alignment:
| Q |
235 |
tatatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgc |
313 |
Q |
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| T |
11026960 |
tatatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgc |
11026882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 10907415 - 10907349
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagta |
302 |
Q |
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| T |
10907415 |
atattttacaattgtaagtcattctaactcttgaattacatctaactcttgagttagttgtctagta |
10907349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 10931299 - 10931233
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagta |
302 |
Q |
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| T |
10931299 |
atattttacaattgtaagtcaatctaactcttgaattacatccaactcttgagttagttgtctagta |
10931233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 10993503 - 10993459
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaa |
280 |
Q |
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| T |
10993503 |
atattttacaattgtaagtcattccaactcttgaattacatctaa |
10993459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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