View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_26 (Length: 286)
Name: NF10602_high_26
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 45455690 - 45455919
Alignment:
| Q |
21 |
acacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45455690 |
acacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctc |
45455789 |
T |
|
| Q |
121 |
tcagcctaagcatcccaaatttccaactttattttaannnnnnngaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatc |
220 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45455790 |
tcagcctaagcatcccaagtttccaactttattttaatttttttgaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatc |
45455889 |
T |
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| Q |
221 |
aatgatcatggaataggcatgtgtcagagt |
250 |
Q |
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|||||||||||||| ||| | ||||||||| |
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| T |
45455890 |
aatgatcatggaattggcctatgtcagagt |
45455919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 40165547 - 40165337
Alignment:
| Q |
21 |
acacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctc |
120 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
40165547 |
acacacagaagaaaaagaaggcaaagtttagagaggattctaaggaagacaaataaaactaataagtaatatttacatgaaccaagaaaaacagtttctc |
40165448 |
T |
|
| Q |
121 |
tcagcctaagcatcccaaatttccaactttattttaannnnnnngaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatc |
220 |
Q |
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| T |
40165447 |
tcagcctaagcatcccaactttccaactttattttaatttttaagaaaaataacagtagaattagaatcttaaatgatcctcatgttgttgacaacaatc |
40165348 |
T |
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| Q |
221 |
aatgatcatgg |
231 |
Q |
| |
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||||||||||| |
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| T |
40165347 |
aatgatcatgg |
40165337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 40165250 - 40165206
Alignment:
| Q |
186 |
aatcttaaatgattctcatgttgttgacaacaatcaatgatcatg |
230 |
Q |
| |
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||||||||||||| |||||||| |||||| ||||||| ||||||| |
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| T |
40165250 |
aatcttaaatgatcctcatgtttttgacagcaatcaaggatcatg |
40165206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 7827074 - 7827137
Alignment:
| Q |
21 |
acacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaata |
84 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
7827074 |
acacacagaagaaaaagaaggcaaagtttagagaggattcaaaggaagacaaataaaactaata |
7827137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 7827154 - 7827204
Alignment:
| Q |
186 |
aatcttaaatgattctcatgttgttgacaacaatcaatgatcatggaatag |
236 |
Q |
| |
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|||||||| |||| |||| ||||||| |||||||||| ||||||||||||| |
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| T |
7827154 |
aatcttaattgatcctcaagttgttgtcaacaatcaacgatcatggaatag |
7827204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 6922216 - 6922175
Alignment:
| Q |
209 |
ttgacaacaatcaatgatcatggaataggcatgtgtcagagt |
250 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6922216 |
ttgacaacaatcaatgatcatggaatatgcatgtgtcagagt |
6922175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 38237662 - 38237703
Alignment:
| Q |
209 |
ttgacaacaatcaatgatcatggaataggcatgtgtcagagt |
250 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38237662 |
ttgacaacaatcaatgatcatggaataagcatgtgtcagagt |
38237703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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