View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_high_30 (Length: 270)
Name: NF10602_high_30
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 954224 - 954480
Alignment:
| Q |
1 |
tatatacattttctttttaatatt-caatctaata----ctcattttttaatgggtaaaatgtatataggtatcatattttgaaaacgaaattcatataa |
95 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
954224 |
tatatacattttctttttaatatttcaatctaatatatactcattttttaatgggtgaaatatatataggtatcatattttgaaaactaaattcatataa |
954323 |
T |
|
| Q |
96 |
agtagtgagacttatacaaattcgatctaataagagagtgaatattatagagtgttacaacgagaggttcctagcatttgttatggtgactattgtgagt |
195 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||||| |||||||||||||| ||| |
|
|
| T |
954324 |
agtagtgagacttatacagattcgacctaataagagagtgaatattagagagtgttagaacgagaggatcctaacatttgtcatggtgactattgtaagt |
954423 |
T |
|
| Q |
196 |
ttaacctaacagaaacattcatcgataagatggaagtagacttctcacaacctttct |
252 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
954424 |
ttaatctaagagaaacattcatcgataaaatggaagtagacttctcacaacctttct |
954480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University