View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_31 (Length: 267)
Name: NF10602_high_31
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 495414 - 495173
Alignment:
| Q |
26 |
agcacagatcacgtttaaagctggcgaagatggccatggtttgattatgaagaaatgggggtttcgtgtgctaaccaagaatggtttaaaaaggacatcg |
125 |
Q |
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| T |
495414 |
agcacagatcacgtttaaagctggcgaggatggccatggtttgattatgaagaaatgggggtttcgcgtgctaaccaagaagggtttaaaaaggacatcg |
495315 |
T |
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| Q |
126 |
gaaacacaacttcctatgccgttcattgagaatgtaggtgaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttg |
225 |
Q |
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| T |
495314 |
gaaacacaacttcctatgccgttcattgagaatgtagggcaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgatg |
495215 |
T |
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| Q |
226 |
aagatgaagttgagaatgaagaagccaagggaaaagaaatca |
267 |
Q |
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| T |
495214 |
aagatgaagttgagaatgaagaagccaagggaaaagaaatca |
495173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 25492588 - 25492687
Alignment:
| Q |
165 |
gaaagaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaa |
264 |
Q |
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| T |
25492588 |
gaaagaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttgtgatgaagatgaagtcgagatgaaacaagccaaggggaaagaaa |
25492687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 25500970 - 25501063
Alignment:
| Q |
168 |
agaagcagaagagttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaag |
261 |
Q |
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| T |
25500970 |
agaagcagtagcattgagcctaaaatccaacttccttacaattggtatgtttctgatgaagatgaagtcgagatgaaacaagccaaggggaaag |
25501063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 25642403 - 25642486
Alignment:
| Q |
181 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgagaatgaagaagccaagggaaaagaaa |
264 |
Q |
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| T |
25642403 |
ttgagcctaaaatccaactcccttacaattggtttgtttctgatgaagatgaagccgagaaggatggagccaaggggaaagaaa |
25642486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 25429197 - 25429256
Alignment:
| Q |
181 |
ttgagcctaaaatcaagcttccttacaattggtcagtttctgttgaagatgaagttgaga |
240 |
Q |
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| T |
25429197 |
ttgagcctaaaatctaacatccttacaattggttagtttctgatgaagataaagtcgaga |
25429256 |
T |
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