View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_37 (Length: 256)
Name: NF10602_high_37
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 25121851 - 25122084
Alignment:
| Q |
12 |
agagatagagtaggaaccacattatgacaagccaaccaaaagttgtatttttcagggagctgaagcttccat--ccaagaccaagagtgagaagccagat |
109 |
Q |
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| T |
25121851 |
agagatagagtaggaaccacattatgacaagccaaccaaaagttatatttttcagggagttgaagcttccatatccaagaccaagagtgagaagccagat |
25121950 |
T |
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| Q |
110 |
taagatcgtctggatcagcatttttgagaagccagttgtaaccactttcttgagaataagtgccatt-ttttggttgttccaaatgtaagcatcttccat |
208 |
Q |
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| T |
25121951 |
taagatcgtctggatcgacatttttgagaagccagttgtaaccacttttttgagaataagtgccattcttttggttgttccaaatgtaagcatcttccat |
25122050 |
T |
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| Q |
209 |
agtatcattgaaattagtgtggatgtgatttatg |
242 |
Q |
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| T |
25122051 |
agtatcattgaaattagtgtggatgtgatttatg |
25122084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 1352752 - 1352834
Alignment:
| Q |
161 |
gagaataagtgccatt-ttttggttgttccaaatgtaagcatcttccatagtatcattgaaattagtgtggatgtgatttatg |
242 |
Q |
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| T |
1352752 |
gagaataagtgccattcttttggttgttccaaatgtaagtatcttccacggtataattgaaattggcgtggatgtgatttatg |
1352834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 9536048 - 9535858
Alignment:
| Q |
54 |
ttgtatttttcagggagctgaagcttcca--tccaagaccaagagtgagaagccagattaagatcgtctggatcagcatttttgagaagccagttgtaac |
151 |
Q |
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| T |
9536048 |
ttgtatttttcaggaagctgaagtttccaaatccaagacctagagtgtgaaggcaaattttgaccagctggatcggcaattttgaggagccaactgtatc |
9535949 |
T |
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| Q |
152 |
cactttcttgagaataagtgccattttttggttgttccaaatgtaagcatcttccatagtatcattgaaattagtgtggatgtgatttatg |
242 |
Q |
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| T |
9535948 |
tacttttcagagaataagtactatttttttgttgttccaaatgacaacatcttcaacagtatcattgaaactaatatgaatgtgttttatg |
9535858 |
T |
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