View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_high_39 (Length: 251)

Name: NF10602_high_39
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_high_39
NF10602_high_39
[»] chr1 (9 HSPs)
chr1 (1-240)||(6521745-6521984)
chr1 (1-83)||(6517051-6517133)
chr1 (1-83)||(6512652-6512734)
chr1 (145-238)||(47778065-47778158)
chr1 (153-240)||(6506903-6506990)
chr1 (1-65)||(6506745-6506809)
chr1 (145-240)||(47788185-47788280)
chr1 (170-237)||(6517220-6517287)
chr1 (149-240)||(47781971-47782062)
[»] scaffold0341 (4 HSPs)
scaffold0341 (153-240)||(928-1015)
scaffold0341 (153-240)||(8581-8668)
scaffold0341 (1-65)||(770-834)
scaffold0341 (1-65)||(8423-8487)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6521984 - 6521745
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||    
T  6521984 tattacttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccac 6521885  T
Q  101 tttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6521884 tttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgc 6521785  T
Q  201 aacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6521784 aacatgcattcttcatcgttgtaccatccaattgcttctt 6521745  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6517051 - 6517133
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517051 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6512652 - 6512734
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 83  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  6512652 tattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatcc 6512734  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 47778158 - 47778065
Alignment:
Q  145 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 238  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| |||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 6506903 - 6506990
Alignment:
Q  153 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 6506990  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6506745 - 6506809
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 65  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506745 tattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 47788280 - 47788185
Alignment:
Q  145 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctt 47788185  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 6517220 - 6517287
Alignment:
Q  170 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgctt 237  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| ||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 240
Target Start/End: Complemental strand, 47782062 - 47781971
Alignment:
Q  149 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctt 47781971  T

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Target: scaffold0341 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 928 - 1015
Alignment:
Q  153 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 1015  T

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Target: scaffold0341; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 8581 - 8668
Alignment:
Q  153 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 240  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 8668  T

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Target: scaffold0341; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 770 - 834
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 65  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  770 tattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

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Target: scaffold0341; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8423 - 8487
Alignment:
Q  1 tattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 65  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8423 tattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

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