View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_high_41 (Length: 251)
Name: NF10602_high_41
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9453044 - 9452811
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9453044 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
9452945 |
T |
|
| Q |
101 |
gttattcaaaatttgatggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgattcgttcgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452944 |
gttattcaaaatttgatggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgattcgttcgtc |
9452845 |
T |
|
| Q |
201 |
aacggaatgagtccattgttgttatgatgcaaat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
9452844 |
aacggaatgagtccattgttgttatgatgtaaat |
9452811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9401028 - 9400839
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| | ||| |||| |
|
|
| T |
9401028 |
agaactcagaagatgcttaattagaagcaatgtttgatttatataaagaagattgaaaacagatctttatgtactctgctagaatctt--tgtgtacgtt |
9400931 |
T |
|
| Q |
101 |
gttattcaaaatttga---tggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgat |
191 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
9400930 |
gttattcaaaatttgatggtggtgttatacttgcattatttttgaaggattaaagc--tcgtagacatgcgtatatttgttatgaacttatgat |
9400839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9410866 - 9410671
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
9410866 |
agaactcagaagatgcttaattagaagcaatgtttgatttatataaagaagattgaaaacagatctttatgtactctgctatgatctttatgtgtacgtt |
9410767 |
T |
|
| Q |
101 |
gttattcaaaatttgat---ggtgttatacttgca----ttatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgat |
191 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9410766 |
gttattcaaaatttgatggtggtgttatacttgcattatttattttagaagtattaaagc--tcatagacatgcgtatatttgttatgaacttatgat |
9410671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 9431871 - 9431680
Alignment:
| Q |
2 |
gaactcagaagatgcgtaattagaagcaatgtttgatttata-taaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
9431871 |
gaactcagacgatgcttaattagaagcaatgtttcatttttaataaagtagattgaaaactgctctttatgtactttgctagtatctttatttgttcgtt |
9431772 |
T |
|
| Q |
101 |
gttattcaaaat---ttgatggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgat |
191 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9431771 |
gttattcaaaatttgttggtggtgttaaacttgcattattttcgaagtattaaagc--tcatagacatgcgtatatttgttatgaacttatgat |
9431680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9419558 - 9419367
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||| ||||||||||| | | || |
|
|
| T |
9419558 |
agaactcagaatatgcttaattagaagcaatgtttgatttatataaagaaaattgaaaacagatacctatgtactctgctagaatctttatttctacatt |
9419459 |
T |
|
| Q |
101 |
gttattcaaaatttga---tggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgat |
191 |
Q |
| |
|
|||||| |||||| || ||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9419458 |
gttattgaaaattcgatagtggagttagacttgcattattttagaagtattaaagc--tcatagacatgcgtatatttgttatgaacttatgat |
9419367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 9412099 - 9411909
Alignment:
| Q |
2 |
gaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgttg |
101 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||| | ||| |||||||||||||| ||||||||||| | ||||| |
|
|
| T |
9412099 |
gaactcagaagatgcttagttagaagcaatgtttgatttatagaaagaaaattgaaaacagatctctatgtactctgctagaatctttatttctccgttg |
9412000 |
T |
|
| Q |
102 |
ttattcaaaatttga---tggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaacttatgat |
191 |
Q |
| |
|
||||| |||||| || ||| |||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9411999 |
ttattgaaaattcgatagtggagttagacttgcattattttataagtattaaagc--tcatatacatgcgtatatttgttatgaacttatgat |
9411909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 9346537 - 9346457
Alignment:
| Q |
12 |
gatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatt |
92 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||| |||||||||| |
|
|
| T |
9346537 |
gatgcttaattagaagcaatgtttgatatatataaagaagattgaaaacttctctttgtgtactctactagaatctttatt |
9346457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 9355947 - 9355867
Alignment:
| Q |
12 |
gatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatt |
92 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||| |||||||||| |
|
|
| T |
9355947 |
gatgcttaattagaagcaatgtttgatatatataaagaagattgaaaacttctctttgtgtactctactagaatctttatt |
9355867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9369057 - 9368998
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaac |
60 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
9369057 |
agaactcagaagatgcttaattagaagcaaagttcgatttatataaagaagattgaaaac |
9368998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 9368991 - 9368910
Alignment:
| Q |
102 |
ttattcaaaatttgatggtg---ttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatga |
182 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9368991 |
ttattcaaaatttgatggtggagttagacttgtattattttaaaagtattaaagct--catagacatgcgtatatttgttatga |
9368910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 10064104 - 10063919
Alignment:
| Q |
1 |
agaactcagaagatgcgtaattagaagcaatgtttgatttatataaagaagattgaaaactgctctttatgtactctgctaaaatctttatttgttcgtt |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||| |||| | || |||| |||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
10064104 |
agaactcacaagatgcttaattagaagcaacatttgatttttatataaaa-attggaaacagctctttatgtaccctgctagaatctttatttgttcgtt |
10064006 |
T |
|
| Q |
101 |
gttattcaaaatttga---tggtgttatacttgcattatttttgaagtattaaagctatcatagacatgcgtatatttgttatgaactt |
186 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||| |||| || | ||| |||| ||| | |||| |||||||||||||||||||| |
|
|
| T |
10064005 |
attattcaaaatttgattgtggagttagacttgcattgttttagatgcattgaagc--tcacaaacatacgtatatttgttatgaactt |
10063919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University