View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_44 (Length: 245)
Name: NF10602_high_44
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 699002 - 699200
Alignment:
| Q |
1 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
100 |
Q |
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| T |
699002 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
699101 |
T |
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| Q |
101 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccatatagcaaccctcgtgtatccctt |
199 |
Q |
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| T |
699102 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccgtatagcaaccctcgtgtatccctt |
699200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 767300 - 767498
Alignment:
| Q |
1 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
767300 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
767399 |
T |
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| Q |
101 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccatatagcaaccctcgtgtatccctt |
199 |
Q |
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| T |
767400 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccgtatagcaaccctcgtgtatccctt |
767498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 36962933 - 36962735
Alignment:
| Q |
1 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36962933 |
ttcttcattgtttgtgagatggtgaagcatgtgaattttctccacatctttgatgtttatacaataactaaatatatgttttgttttaaaagattataat |
36962834 |
T |
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| Q |
101 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccatatagcaaccctcgtgtatccctt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36962833 |
caagaatccattaaaagagagaaccaattgtaaatagacataacgtgcaatttcgtgtgcctgcctgccgtgccgtatagcaaccctcgtgtatccctt |
36962735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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