View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_5 (Length: 407)
Name: NF10602_high_5
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 39519960 - 39519582
Alignment:
| Q |
17 |
atatcttacattcattcatttggttgagttggttgatgttttatgaaaatgtacatacatacagggaagaaggaggaggaagtgagttgaagccaatgga |
116 |
Q |
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| T |
39519960 |
atatcttacattcattcatgtg-----gttggttgatgttttatgaaaatgtacatacatacagggaagaaggaggaggaagtgagttgaaggcaatgga |
39519866 |
T |
|
| Q |
117 |
tgctgagcaactgagagagcaaggtcataagatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttagccaagttcaggtt |
216 |
Q |
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| T |
39519865 |
tgctgagcaactgagagaacaaggtcatatgatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttagccaagttcaggtt |
39519766 |
T |
|
| Q |
217 |
ctctttctatccattttcatctaatatttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccaga |
316 |
Q |
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| T |
39519765 |
ctctttctatccattttcatctaatatttgttattgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccaga |
39519666 |
T |
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| Q |
317 |
ttctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgctt |
400 |
Q |
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| T |
39519665 |
ttctgctcctactcatcctgaatcattgcaacatgttttaaatggtttaattacttacttttctcaattaattgacctttgctt |
39519582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 44 - 386
Target Start/End: Complemental strand, 39532396 - 39532054
Alignment:
| Q |
44 |
gttggttgatgttttatgaaaatgtacatacatacagggaagaaggaggaggaagtgagttgaagccaatggatgctgagcaactgagagagcaaggtca |
143 |
Q |
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| T |
39532396 |
gttggttgatgttttatgaaaatgtacatacatacagggaagaaggaggaggaagtgagttgaaggcaatggatgctgagcaactgagagaacaaggtca |
39532297 |
T |
|
| Q |
144 |
taagatggttgatttcattgctgattactacaaaaccattgaaaattttccagttcttagccaagttcaggttctctttctatccattttcatctaatat |
243 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39532296 |
tatgatggttgatttcattgctgattactacaaaacaattgaaaatttccctgttcttagccaagttcaggttctctttctatccattttcatctaatat |
39532197 |
T |
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| Q |
244 |
ttgttactgtttcaatttctttcaacatttttaccccattgcagccaggttatcttggaaagcttcttccagattctgctcctactcatcctgaatcatt |
343 |
Q |
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| T |
39532196 |
ttgttactgtttcaatttctttcaatatttttaccccattgcagccaggttatcttggaaagcttctaccagattctgctcctactcatcctgaatcatt |
39532097 |
T |
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| Q |
344 |
gcaacatgttttaaatggtttaattacttacttttctcaatta |
386 |
Q |
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| T |
39532096 |
gcaacatgttttaaatggtttaattacttacttttctcaatta |
39532054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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