View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_high_6 (Length: 397)

Name: NF10602_high_6
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_high_6
NF10602_high_6
[»] chr3 (1 HSPs)
chr3 (10-385)||(34256381-34256756)
[»] chr4 (2 HSPs)
chr4 (180-240)||(25105809-25105869)
chr4 (181-228)||(20266562-20266609)
[»] chr5 (2 HSPs)
chr5 (180-241)||(23948992-23949053)
chr5 (167-229)||(18086939-18087001)
[»] chr2 (2 HSPs)
chr2 (175-240)||(35431790-35431854)
chr2 (181-237)||(33068820-33068876)
[»] chr1 (1 HSPs)
chr1 (175-237)||(32270051-32270113)
[»] chr7 (2 HSPs)
chr7 (203-240)||(14107753-14107790)
chr7 (203-240)||(14417710-14417747)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 34256381 - 34256756
Alignment:
Q  10 aatgacttaagtatacaaatgtattaaccactaaaattacatcgttataccaaacatacatttagttgtaacnnnnnnnnnncacacatttagttaacca 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          || |||||||||||| ||    
T  34256381 aatgacttaagtatataaatgtattaaccactaaaattacatcgttatatcaaacatacatttagttgtaacaaaaaaaaaacatacatttagttaatca 34256480  T
Q  110 ctaaagataagtcattaagaattaggattctctct-tttaatcatttaactnnnnnnncttttttctttgataaattaaaaacacaatgatattaaagag 208  Q
    ||| ||||||||||||||||||||||||||||||  |||||||||||||||         |||  |||||||||||||||||||||||||||||||||||    
T  34256481 ctagagataagtcattaagaattaggattctctccatttaatcatttaactaaaaaaaaattt--ctttgataaattaaaaacacaatgatattaaagag 34256578  T
Q  209 aatagaaggtgtcccaactaaactctaatcatcaaatagatgacttgagtggtgattggtggttgtcgcggtgatgatcggagtggtggttatagtgttg 308  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34256579 aatagaaggtgtcccaactagactctaatcatcaaataaatgacttgagcggtgattggtggttgtcgcggtgatggtcggagtagtggttatagtgttg 34256678  T
Q  309 tttcatggtggtcaaagatggctagagtggtgttccacggtaattgagtagtggttagagtagttat-ggtggtgatg 385  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||| ||||| ||||||||||    
T  34256679 tttcatggtggtcaaagatggttagagtggtgttccacgataattgagttgtgcttagagtggttatgggtggtgatg 34256756  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 25105869 - 25105809
Alignment:
Q  180 taaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaaactctaatcat 240  Q
    |||||||| | |||||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  25105869 taaattaagagcacaatgatattgaagagaatagaaggtttcccaactagactctaatcat 25105809  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 20266562 - 20266609
Alignment:
Q  181 aaattaaaaacacaatgatattaaagagaatagaaggtgtcccaacta 228  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  20266562 aaattaaaagcacaatgatattaaagagaatagaaggcgtccaaacta 20266609  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23948992 - 23949053
Alignment:
Q  180 taaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaaactctaatcatc 241  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||| ||| | ||||||    
T  23948992 taaattaagagcacaatgatattgaagagaatagaaggtgtcccaactagactttgatcatc 23949053  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 18087001 - 18086939
Alignment:
Q  167 cttttttctttgataaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaa 229  Q
    ||||||| |||| ||||| || |||| ||||| ||||||||||||||||| |||| |||||||    
T  18087001 cttttttttttggtaaatgaagaacataatgacattaaagagaatagaagatgtctcaactaa 18086939  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 35431790 - 35431854
Alignment:
Q  175 tttgataaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaaactctaatcat 240  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  35431790 tttgctaaattaaatac-caatgatattaaagagaatagaaggtgtaacaactaaaccctaatcat 35431854  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 33068876 - 33068820
Alignment:
Q  181 aaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaaactctaat 237  Q
    ||||||| | ||||||||||||||| |||||||||| |||| |||||| ||||||||    
T  33068876 aaattaagagcacaatgatattaaaaagaatagaagatgtctcaactagactctaat 33068820  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 32270113 - 32270051
Alignment:
Q  175 tttgataaattaaaaacacaatgatattaaagagaatagaaggtgtcccaactaaactctaat 237  Q
    |||| |||||||| | |||||||||||||||||||||||| |||| |||||| | ||||||||    
T  32270113 tttgttaaattaagagcacaatgatattaaagagaatagagggtgacccaacaagactctaat 32270051  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14107790 - 14107753
Alignment:
Q  203 aaagagaatagaaggtgtcccaactaaactctaatcat 240  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  14107790 aaagagaatagaagatgtcccaactagactctaatcat 14107753  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14417747 - 14417710
Alignment:
Q  203 aaagagaatagaaggtgtcccaactaaactctaatcat 240  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  14417747 aaagagaatagaagatgtcccaactagactctaatcat 14417710  T

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