View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_66 (Length: 232)
Name: NF10602_high_66
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 28029706 - 28029553
Alignment:
| Q |
15 |
aaggtgactcataccttttcttttccaaagaaactagaca-------gacagtttttctttaacgtacacattagtaaccaataggcaataaccaacttt |
107 |
Q |
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| T |
28029706 |
aaggtgactcataccttttcttttccaaagaaactagacactagacagacagtttttctttaacgtacacatcagtaaccaataggcaataaccaacttt |
28029607 |
T |
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| Q |
108 |
acttctccaagaaggagtcttcact-tgtgctttgtgtcatttcaagaagtaaa |
160 |
Q |
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| T |
28029606 |
acttctccaagaaggagtcttcactgtgtgctttgtgtcatttcaagaagtaaa |
28029553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 28029742 - 28029705
Alignment:
| Q |
66 |
tttaacgtacacattagtaaccaataggcaataaccaa |
103 |
Q |
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| T |
28029742 |
tttaaggtacacattaataaccaataggcaataaccaa |
28029705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 37800467 - 37800413
Alignment:
| Q |
54 |
agacagtttttctttaacgtacacattagtaaccaataggcaataaccaacttta |
108 |
Q |
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| T |
37800467 |
agacagtctttctttaacgtacacattaataaccaataagcaataaccaacttta |
37800413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 37800364 - 37800312
Alignment:
| Q |
106 |
ttacttctccaagaaggagtcttcact-tgtgctttgtgtcatttcaagaagt |
157 |
Q |
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| T |
37800364 |
ttacttctccaagaaggagtcttcactgtgctctttgtgtcgtttcaagaagt |
37800312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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