View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_72 (Length: 225)
Name: NF10602_high_72
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 29722739 - 29722931
Alignment:
| Q |
17 |
aattgtgactaaaacaataagtcagattccttggataatggacacagctacacaagagtcatgcatcaagttaaccaaactcttgaacnnnnnnnnggtt |
116 |
Q |
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| T |
29722739 |
aattgtgactaaaacaataagtcagattccttggataatggacacagccacacaa-agtcatgcatcaagttagccaaactcttgaacttttttttggtt |
29722837 |
T |
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| Q |
117 |
cagtgcaataaaagtgaggaattgagtgagtcacagggcattattggtaaagtgagtgatgtannnnnnnaatctaacaactcggtatattcat |
210 |
Q |
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| T |
29722838 |
cagtgcaataaaagtgaggaattgagtgagtcacagggcattattggtaaagtgagtgatgtatttttttaatctaacaactcggtatattcat |
29722931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 29737453 - 29737322
Alignment:
| Q |
20 |
tgtgactaaaacaataagtcagattccttggataatggacacagctacacaagagtcatgcatcaagttaaccaaactcttgaacnnnnnnnnggttcag |
119 |
Q |
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||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
29737453 |
tgtgacttaagcaataagtcagattcctttgataatggacacagccacacaagagtcatgcatcaagttagccaaactcttgaacttttttctggttcag |
29737354 |
T |
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| Q |
120 |
tgcaataaaagtgaggaattgagtgagtcaca |
151 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
29737353 |
tgcaatcaaagtgaggaattgagtgagtcaca |
29737322 |
T |
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