View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_high_8 (Length: 377)
Name: NF10602_high_8
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 113 - 370
Target Start/End: Original strand, 32372789 - 32373046
Alignment:
| Q |
113 |
aatttaattttttgtattaaggaacaaaatcaaagatatatatttacaatggaaataactcatccttaagacgaggacagatccattgaatctgaatata |
212 |
Q |
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| T |
32372789 |
aattttattttttgtattaaggaacaaaatcaaagatatatatttacaatggaaataactcatccttaagacgaggacagatccattgaatctgaatata |
32372888 |
T |
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| Q |
213 |
agtaatctcccacatatcatcatcttcttttggctccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatttcactc |
312 |
Q |
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| T |
32372889 |
agtaatctcccacatatcatcatcttcttttggctccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatttcactc |
32372988 |
T |
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| Q |
313 |
aaagatgatggaccataatgtcctaactcagctttcatgcatgtatccattcttctca |
370 |
Q |
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| T |
32372989 |
aaagatgatggaccataatgtcctaactcagctttcatgcatgtatccattcttctca |
32373046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 32360594 - 32360750
Alignment:
| Q |
68 |
aaactcagggattaaaattgaataatttcaatgaggtagtaaatgaatttaattttttgtattaaggaacaaaatcaaagatatatatttacaatggaaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32360594 |
aaactcagggattaaaattgaataatttcaatgaggtagtaaatgaattttattttttgtattaaggaacataatcaaagatatatatttacaatggaaa |
32360693 |
T |
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| Q |
168 |
taactcatccttaagacgaggacagatccattgaatctgaatataagtaatctccca |
224 |
Q |
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| T |
32360694 |
taactcatccttaagaggaggacagatccattgaatctgaatacaagtaatctccca |
32360750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 32360748 - 32360844
Alignment:
| Q |
248 |
ccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatt--tcactcaaagatgatggaccataatgtcctaactca |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32360748 |
ccaaaattccttcatccttcatttgtgttataatctttttcaacaaatcaggaataatttctcactcaaagatgatggaccataatgtcctaactca |
32360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 32372605 - 32372654
Alignment:
| Q |
18 |
gaagatactattttcatttggagtaaccgaaatttgatgacataaacata |
67 |
Q |
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| T |
32372605 |
gaagatactattttcatttggagtaaccgaaatttgatgacataaacata |
32372654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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