View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_high_80 (Length: 217)
Name: NF10602_high_80
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_high_80 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 45868560 - 45868757
Alignment:
| Q |
1 |
aattctctgatattgcggcccagattgtggttacgtacctttatttaaagagattaaaggaaatgcactgtcagtgtaaagttattttacactgacaaca |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45868560 |
aattctctgatattgcggcgcacattgtggttacgtacctttatttaaagagattaaaggaaatgcactgtcagtgtaaagttattttacactgacaacc |
45868659 |
T |
|
| Q |
101 |
aatcacaatttgccaagacatcaaacaatacaattatgttgctgttttttcaatttctttatttaaaaaatgtataatatgatgtggcaaattgaaaa |
198 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45868660 |
aatcacaattttccaagatatcaaacaatacaattatgttactcttttttcaatttctttattttaaaaatgtataatatgatgtggcaaattgaaaa |
45868757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 45982445 - 45982248
Alignment:
| Q |
1 |
aattctctgatattgcggcccagattgtggttacgtacctttatttaaagagattaaaggaaatgcactgtcagtgtaaagttattttacactgacaaca |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45982445 |
aattctctgatattgcggcgcacattgtggttacgtacctttatttaaagagattaaaggaaatgcactgtcagtgtaaagttattttacactgacaacc |
45982346 |
T |
|
| Q |
101 |
aatcacaatttgccaagacatcaaacaatacaattatgttgctgttttttcaatttctttatttaaaaaatgtataatatgatgtggcaaattgaaaa |
198 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45982345 |
aatcacaattttccaagatatcaaacaatacaattatgttactcttttttcaatttctttattttaaaaatgtataatatgatgtggcaaattgaaaa |
45982248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 44240736 - 44240812
Alignment:
| Q |
53 |
attaaaggaaatgcactgtcagtgtaaagttattttacactgacaacaaatcacaatttgccaagacatcaaacaat |
129 |
Q |
| |
|
||||||||| ||| ||||| |||||||| ||||||||||| ||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
44240736 |
attaaaggatatgtactgtgagtgtaaaattattttacaccaacaactaatcacaactcgccaagacaacaaacaat |
44240812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 24947834 - 24947763
Alignment:
| Q |
58 |
aggaaatgcactgtcagtgtaaagttattttacactgacaacaaatcacaatttgccaagacatcaaacaat |
129 |
Q |
| |
|
|||| ||||| |||||| ||||||||| ||||||| |||||| || || ||||||||| |||||||||||| |
|
|
| T |
24947834 |
aggacatgcagtgtcagggtaaagttactttacaccgacaaccaaccaatatttgccaacacatcaaacaat |
24947763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 24113267 - 24113210
Alignment:
| Q |
51 |
agattaaaggaaatgcactgtcagtgtaaagttattttacactgacaacaaatcacaa |
108 |
Q |
| |
|
|||||||| || ||||| |||||||||||| || ||||||||| ||||| |||||||| |
|
|
| T |
24113267 |
agattaaaagatatgcattgtcagtgtaaaattgttttacacttacaaccaatcacaa |
24113210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 45642721 - 45642778
Alignment:
| Q |
42 |
tatttaaagagattaaaggaaatgcactgtcagtgtaaagttattttacactgacaac |
99 |
Q |
| |
|
|||||| ||||||||| ||| |||||| ||||||| || ||| ||||||||||||||| |
|
|
| T |
45642721 |
tatttagagagattaatggatatgcaccgtcagtggaatgttgttttacactgacaac |
45642778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University