View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_1 (Length: 473)
Name: NF10602_low_1
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 23011023 - 23010565
Alignment:
| Q |
1 |
aaaatactagttgctttcaaggccggtgtccaacttggaaaagatatcgtttatgcaagcaaatggtaaagaagatagaggcgatacgaaaattcaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23011023 |
aaaatactagttgctttcaagggcggtgtccaacttggaaaagatatcgattatgcaagcaaacggtaaagaagatagaggcgatacgaaaattcaaagg |
23010924 |
T |
|
| Q |
101 |
cacaagcaatattaagccgttttctcaccgcgctcctcttcctggcataaaactccaatcatcagaggattttacttattttgaatcaacaaaagtggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23010923 |
cacaagcaatattaagccgttttctcaccgcgctcctcttcctggcataaaactccaatcatcagaggattttacttattttgaatcaacaaaagtggct |
23010824 |
T |
|
| Q |
201 |
agcagtcaactattggaggcacttcgagacgaggacatctacatgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttg |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23010823 |
agcagtcaactactggaggcacttcgagacgaggacatctacatgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttg |
23010724 |
T |
|
| Q |
301 |
gtaagaaggttgaagcatcaaatgtttttgacaagactatattaattacagtgtctcaaactcctaatattagagatattcaaggaaaaatagctgatgt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23010723 |
gtaagaaggttgaagcatcaaatgtttttgacaagactatattaattacagtgtctcaaactcccaatattagagatattcaaggaaaaatagctgatgt |
23010624 |
T |
|
| Q |
401 |
tttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttga |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23010623 |
tttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttga |
23010565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 236 - 459
Target Start/End: Complemental strand, 21715886 - 21715663
Alignment:
| Q |
236 |
catctacatgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaag |
335 |
Q |
| |
|
|||||| |||||||| |||||||||||||| ||| |||||||||| | ||||| || ||||| |||||||||| | | | ||||||| | || || ||| |
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| T |
21715886 |
catctatatgataggtgtgtatggaatgggtggatgtgggaaaacaacacttgtaaccgaagtcggtaagaaggctcaggaatcaaatatgttcgataag |
21715787 |
T |
|
| Q |
336 |
actatattaattacagtgtctcaaactcctaatattagagatattcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagg |
435 |
Q |
| |
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|||| || |||||||||||||||| ||||||||||| |||||||||||||| || || | || ||| ||||| | |||||||||| || |||| |
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| T |
21715786 |
gtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagg |
21715687 |
T |
|
| Q |
436 |
gaagagcacaacgtttgtggttga |
459 |
Q |
| |
|
||||||||||||| |||||||||| |
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|
| T |
21715686 |
gaagagcacaacggttgtggttga |
21715663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 458
Target Start/End: Original strand, 21115017 - 21115299
Alignment:
| Q |
176 |
ttattttgaatcaacaaaagtggctagcagtcaactattggaggcacttcgagacgaggacatctacatgataggagtgtatggaatgggcggaactggg |
275 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||||||||||||||| || || ||||| || |||||| ||||||||||||| ||| || |
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|
| T |
21115017 |
ttattttgaatcaacaaaggtggcttacaatcaactattggaggcacttaaggatgattgcatctctataataggaatgtatggaatgggtggatgcgga |
21115116 |
T |
|
| Q |
276 |
aaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatattaattacagtgtctcaaactcctaatattagag |
375 |
Q |
| |
|
|||||| | |||| | |||||||| ||||||| ||| | || | || | ||||| ||| ||||| ||| || || |||||||||| |||||||||| |
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|
| T |
21115117 |
aaaacaacccttgcagcagaagttggcaagaaggctgaggaattagatatgtttgataaggttatatcaatcactgtcgctcaaactccaaatattagag |
21115216 |
T |
|
| Q |
376 |
atattcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttg |
458 |
Q |
| |
|
||||| |||||| | || ||| | || ||| |||||||||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
21115217 |
gcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttg |
21115299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 391
Target Start/End: Original strand, 21703636 - 21703784
Alignment:
| Q |
243 |
atgataggagtgtatggaatgggcggaactgggaaaacagctcttgttactgaagttggtaagaaggttgaagcatcaaatgtttttgacaagactatat |
342 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||| ||| | ||||||| | || || ||| ||| | |
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| T |
21703636 |
atgataggagtgtatggaatgggtggatgtgggaaaacaactcttgcaactgaagttggtaagaaggctgaggaatcaaatatgttcgataaggttatct |
21703735 |
T |
|
| Q |
343 |
taattacagtgtctcaaactcctaatattagagatattcaaggaaaaat |
391 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| | |||||||||||||| |
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|
| T |
21703736 |
taatcacagtgtctcaaactccaaacgttagaaaaattcaaggaaaaat |
21703784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 21122646 - 21122726
Alignment:
| Q |
378 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttg |
458 |
Q |
| |
|
||||||||| |||| || ||| | || ||| ||||||||| |||||||||||| || ||||||||||||||| | |||||| |
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| T |
21122646 |
attcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttg |
21122726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 21703419 - 21703538
Alignment:
| Q |
29 |
tccaacttggaaaagatatcgtttatgcaagcaaatggtaaagaagatagaggcgatacgaaaattcaaaggcacaagcaatattaagccgttttctcac |
128 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||||||||||| | |||| || || ||| ||||| | |||||||||| | || ||||||||| |
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|
| T |
21703419 |
tccaacatggagaagatatcgtttgagcaagcaaatggtaaagaaggcacaggcaatggaaagattaaaaggaaaaagcaatattcaaccattttctcac |
21703518 |
T |
|
| Q |
129 |
cgcgctcctcttcctggcat |
148 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
21703519 |
ttagctcctcttccaggcat |
21703538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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