View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_11 (Length: 376)
Name: NF10602_low_11
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 36423203 - 36423553
Alignment:
| Q |
19 |
ttgcatgccttccagtcgcttcagggtggtatggaacaccagttgaagagagtagaagattgattaaggtgcagtgttattcaagcaaaggcactgtcaa |
118 |
Q |
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| T |
36423203 |
ttgcatgccttccagtcgcttcagggtggtatggaacaccggttgaagagaatagaagattgattaaggtgcagtgttattcaagcaaaggcactgtcaa |
36423302 |
T |
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| Q |
119 |
tttctacatgaaaccgatagaaggtttaactgtgttggttgatatggataagagagaggttgtgtccattacagataatggactaaacattcctgtcgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423303 |
tttctacatgaaaccgatagaaggtttaactgtgttggttgatatggataagagagaggttgtgtccattacagataatggactaaacattcctgtcgca |
36423402 |
T |
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| Q |
219 |
aatggtatcgacactgattaccgttactcagttcagaaactcaacggagagttgaacttgataaatccaatttccttggaacaaccaaaaggtccaagct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423403 |
aatggtatcgacactgattaccgttactcagttcagaaactcaacggagagttgaacttgataaatccaatttccttggaacaaccaaaaggtccaagct |
36423502 |
T |
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| Q |
319 |
ttacagttgatggacatttggtgaaatgggctaattgggaatttcatctca |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423503 |
ttacagttgatggacatttggtgaaatgggctaattgggaatttcatctca |
36423553 |
T |
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