View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_110 (Length: 217)
Name: NF10602_low_110
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 24402447 - 24402638
Alignment:
| Q |
15 |
aatttcaaccgttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttccca |
114 |
Q |
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| T |
24402447 |
aatttcaaccgttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttccca |
24402546 |
T |
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| Q |
115 |
gttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttcttctcac |
206 |
Q |
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| T |
24402547 |
gttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttcttgtcac |
24402638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 24415264 - 24415454
Alignment:
| Q |
16 |
atttcaaccgttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccag |
115 |
Q |
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| T |
24415264 |
atttcaaccactggatttgcaattttatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccag |
24415363 |
T |
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| Q |
116 |
ttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttcttctcac |
206 |
Q |
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| T |
24415364 |
ttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgttctaaggatttttagctttgcttgcttccttgtcac |
24415454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 24419261 - 24419071
Alignment:
| Q |
16 |
atttcaaccgttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccag |
115 |
Q |
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||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419261 |
atttcaaccactggactagcaattttatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccag |
24419162 |
T |
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| Q |
116 |
ttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttcttctcac |
206 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
24419161 |
ttgaaatgtactttgtacagaagaaagttggagcttggactagaaaatggattgctctaaggatttttagctttgcttgctttcttgtcac |
24419071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 24380230 - 24380415
Alignment:
| Q |
16 |
atttcaaccgttggatttgcaattctatttccttacttcaactcagttctaggattattaggagccataaatttctggccattggctatatatttcccag |
115 |
Q |
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||||||||| |||| |||||||| | |||||||||||||| | |||||||| || |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
24380230 |
atttcaaccactggacttgcaattttctttccttacttcaatcaaattctaggagtactaggaggcataaatttctggccactggctatatatttcccag |
24380329 |
T |
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| Q |
116 |
ttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttctt |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
24380330 |
ttgaaatgtactttgtacagaagaaaattggagcttggactaaaaaatggattgttctcaggatatttagctttgcttgctttctt |
24380415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 42363075 - 42363172
Alignment:
| Q |
103 |
atatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttct |
200 |
Q |
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||||||||||| || || ||||| ||||||||||||||||||| ||||||| ||| | |||||||||||| |||| ||||||||||| |||| |||| |
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| T |
42363075 |
atatatttcccggtagagatgtattttgtacagaataaaattgaagcttggtctacaaaatggattgttcttaggacttttagctttgtttgccttct |
42363172 |
T |
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