View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_114 (Length: 211)
Name: NF10602_low_114
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_114 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 24415303 - 24415123
Alignment:
| Q |
15 |
tgaagtaaggaaatagaattgcaagtccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
114 |
Q |
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| T |
24415303 |
tgaagtaaggaaataaaattgcaaatccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
24415204 |
T |
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| Q |
115 |
aagtttcactttgtggaaattgttcacaaagccactgttggggtannnnnnngtgaaccatctatcagcagtactatatat |
195 |
Q |
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| T |
24415203 |
aagtttcactttgtggaaattgttcacaaagccactgttggggtatttttttgtgaaccatctatcagcagtactatatat |
24415123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 24419222 - 24419402
Alignment:
| Q |
15 |
tgaagtaaggaaatagaattgcaagtccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
114 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
24419222 |
tgaagtaaggaaataaaattgctagtccagtggttgaaatcacatagcttgttctataacagaatctgaaaagatttatctccaaagctggtaatagagg |
24419321 |
T |
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| Q |
115 |
aagtttcactttgtggaaattgttcacaaagccactgttggggtannnnnnngtgaaccatctatcagcagtactatatat |
195 |
Q |
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| T |
24419322 |
aagtttcactttgtggaaatcgttcacaaagccactgttagggtatttttttgagaaccatctatcagcagtagtatatat |
24419402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 24380269 - 24380134
Alignment:
| Q |
15 |
tgaagtaaggaaatagaattgcaagtccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
114 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||| |
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| T |
24380269 |
tgaagtaaggaaagaaaattgcaagtccagtggttgaaatcacatagcttgttctgaaacagaacctgaaaagatttatcttaaaagaaggtaatagagg |
24380170 |
T |
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| Q |
115 |
aagtttcactttgtggaaattgttcacaaagccact |
150 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
24380169 |
aagtttcactttgtggaaatcattcacaaagccact |
24380134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 24402487 - 24402357
Alignment:
| Q |
15 |
tgaagtaaggaaatagaattgcaagtccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
114 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| ||| || |||| |||||| || |||||||||||||||||||||| |||||||||||| |
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| T |
24402487 |
tgaagtaaggaaatagaattgcaaatccaacggttgaaattacaaaggccgttcgaaaacaaaacctgaaaaggtttatctcaaaagcaggtaatagagg |
24402388 |
T |
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| Q |
115 |
aagtttcactttgtggaaattgttcacaaag |
145 |
Q |
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| T |
24402387 |
aagtttcactatgtggaaatcattcacaaag |
24402357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 42363027 - 42362886
Alignment:
| Q |
15 |
tgaagtaaggaaatagaattgcaagtccagtggttgaaatcacatagcttgttctaaaacagaatctgaaaaggtttatctcaaaagaaggtaatagagg |
114 |
Q |
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||||||||||||| | |||||||||||||| || ||||||||||| |||||||||||| | || || | ||| | || ||||| || || ||||| |
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| T |
42363027 |
tgaagtaaggaaacatgattgcaagtccagttgtggaaatcacataagctgttctaaaacatatcctcaacatgttcagctgaaaagccggcaaaagagg |
42362928 |
T |
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| Q |
115 |
aagtttcactttgtggaaattgttcacaaagccactgttggg |
156 |
Q |
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||||||| || || |||||| |||||||| ||||||||||| |
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| T |
42362927 |
cagtttcaattggtagaaattattcacaaaaccactgttggg |
42362886 |
T |
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