View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_118 (Length: 204)

Name: NF10602_low_118
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_118
NF10602_low_118
[»] chr3 (1 HSPs)
chr3 (4-186)||(34256213-34256395)
[»] chr1 (2 HSPs)
chr1 (70-159)||(38647825-38647915)
chr1 (22-52)||(38647781-38647811)
[»] chr2 (1 HSPs)
chr2 (151-184)||(30544174-30544207)
[»] chr6 (1 HSPs)
chr6 (154-186)||(31768176-31768208)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 34256395 - 34256213
Alignment:
Q  4 tatacttaagtcatttgatactccctccgtctcttaaaaattgacgtttnnnnnnnnnnnngctaacagaattattgtcgctttgtaatttcaatgtgga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||| ||||||||||| ||||||||||||||||||||||    
T  34256395 tatacttaagtcatttgatactccctccgtctcttaaaaattgacgtttaaaaaaaaataa-ctagcagaattattggcgctttgtaatttcaatgtgga 34256297  T
Q  104 attaagcaagtttttccagttttgcccctgtgtaa-tgcacacacttatttttgaaaaaagccatcttgagccatgtgtgaaat 186  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  34256296 attaagcaagtttttccagttttgcccctgtgtaactgcacatgcttatttttgaaaaaagccgtcttgagccatgtgtgaaat 34256213  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 38647825 - 38647915
Alignment:
Q  70 cagaattattgtcgctttgtaatttcaatgtggaattaagcaagtttttccagttttgcccctgtgtaa-tgcacacacttatttttgaaa 159  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||||||| ||| |||| |||| ||||| ||||||| |||||||||||||    
T  38647825 cagaattattgtcgctttgtaatttcaacgtgaaattaagtaagttttttcagatttgtccctatgtaactgcacacgcttatttttgaaa 38647915  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 38647781 - 38647811
Alignment:
Q  22 tactccctccgtctcttaaaaattgacgttt 52  Q
    |||||||||||||||||||||||||||||||    
T  38647781 tactccctccgtctcttaaaaattgacgttt 38647811  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 30544174 - 30544207
Alignment:
Q  151 tttttgaaaaaagccatcttgagccatgtgtgaa 184  Q
    ||||||||||||| ||||||||||||||||||||    
T  30544174 tttttgaaaaaagtcatcttgagccatgtgtgaa 30544207  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 31768208 - 31768176
Alignment:
Q  154 ttgaaaaaagccatcttgagccatgtgtgaaat 186  Q
    ||||||| |||||||||||||||||||||||||    
T  31768208 ttgaaaacagccatcttgagccatgtgtgaaat 31768176  T

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