View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_120 (Length: 202)
Name: NF10602_low_120
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_120 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 41068648 - 41068775
Alignment:
| Q |
55 |
gaaataaaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaacggacacattcattt |
154 |
Q |
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| T |
41068648 |
gaaataaaatagagtttgagtgatgagataaaatggagatggaagaaggtaaatgtatcaatgagtattttatgttggactttaacagacacattcattt |
41068747 |
T |
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| Q |
155 |
ttgggtactt-aatgggtccaacgtgta |
181 |
Q |
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| T |
41068748 |
ttgggtatttaaatgggtccaacgtgta |
41068775 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 8605986 - 8606070
Alignment:
| Q |
55 |
gaaataaaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
8605986 |
gaaatgaaatagagtttgagtgatgagatgaaatgatgataggagaaagtgaatgaattaaggagtattttatgttggactttaa |
8606070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 13207241 - 13207325
Alignment:
| Q |
55 |
gaaataaaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
13207241 |
gaaatgaaatagagtctgagtgatgagatgagatgatgatagaagaaagtgaatggattaatgagtattttatgttgggctttaa |
13207325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 31136466 - 31136389
Alignment:
| Q |
62 |
aatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
31136466 |
aatagagtgtgagtgatgagataagatgatgataggagaaagtgaatgaattaaggagtattttatgttggactttaa |
31136389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 32971564 - 32971480
Alignment:
| Q |
55 |
gaaataaaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
32971564 |
gaaataaaatagagtttgagtgatgagatgagatgatgattgaagtaggtgaatggattaaagagtagtttatgttggactttaa |
32971480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 1498055 - 1498127
Alignment:
| Q |
64 |
tagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactt |
136 |
Q |
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| T |
1498055 |
tagagtgtgagtgatgagatgaaatgatgatgggagaaagtgaatgtattaaggagtattttaggttggactt |
1498127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 32322128 - 32322050
Alignment:
| Q |
61 |
aaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
32322128 |
aaatagactgtgagtgatgacatgagatgatgatgggagaaagtaaatgaattaaggagtattttatgttggactttaa |
32322050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 9827065 - 9826987
Alignment:
| Q |
61 |
aaatagagtttgagtgatgagataaaatggggatgggagaaggtaaatgtatcgatgagtattttatgttggactttaa |
139 |
Q |
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| T |
9827065 |
aaatagactatgagtgatgagatgagatgatgatgggagaaagtgaatgaattaaggagtattttatgttggactttaa |
9826987 |
T |
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