View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_13 (Length: 373)
Name: NF10602_low_13
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_13 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 16860 - 16566
Alignment:
| Q |
1 |
tgtgttacaggaaagggaactatggttacctgaagttcggtaggaggtaaatatagtctgactatcaaatattatttcatccaagaatcgtattcgggtt |
100 |
Q |
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|||||||| || |||| |||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||||| | ||||| |
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| T |
16860 |
tgtgttacggggaaggaaactctggttatctggagtttggtaggaggtaagtatagtctgactatcaaatattgtttcacccaagaatcgtacttgggtt |
16761 |
T |
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| Q |
101 |
cactcatgaattcaatatttgtgtttttaacattcttttctttcttttggattgtggggtgtgccnnnnnnnnnnn-gtcttttgtatgattgtgcaata |
199 |
Q |
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| T |
16760 |
cactcatgaatccaatgtttatgttttttacattcttttctttcttttggattgtggggtgtgcctattttttttttgtcttttgtatgattgtgcaata |
16661 |
T |
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| Q |
200 |
aaaaaggaggatggaaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggtcgctatagg |
295 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
16660 |
aaaaaggaggatggaaattagacttagggg-tttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggtcactatagg |
16566 |
T |
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Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 3629225 - 3629519
Alignment:
| Q |
1 |
tgtgttacaggaaagggaactatggttacctgaagttcggtaggaggtaaatatagtctgactatcaaatattatttcatccaagaatcgtattcgggtt |
100 |
Q |
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|||||||| || |||| |||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||||| | ||||| |
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| T |
3629225 |
tgtgttacggggaaggaaactctggttatctggagtttggtaggaggtaagtatagtctgactatcaaatattgtttcacccaagaatcgtacttgggtt |
3629324 |
T |
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| Q |
101 |
cactcatgaattcaatatttgtgtttttaacattcttttctttcttttggattgtggggtgtgccnnnnnnnnnnn-gtcttttgtatgattgtgcaata |
199 |
Q |
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||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3629325 |
cactcatgaatccaatgtttatgttttttacattcttttctttcttttggattgtggggtgtgcctattttttttttgtcttttgtatgattgtgcaata |
3629424 |
T |
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| Q |
200 |
aaaaaggaggatggaaattagacttagggggtttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtaattaggtcgctatagg |
295 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
3629425 |
aaaaaggaggatggaaattagacttagggg-tttaggcgtgtagattatgtactaacaaaagtaaaataaatgaagagtagttaggtcactatagg |
3629519 |
T |
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