View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_15 (Length: 355)
Name: NF10602_low_15
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 13397709 - 13398036
Alignment:
| Q |
18 |
attggcaggacttagtgtagaatcaggccatttaaacaattggactaagccaagaacaaattgctacgccatcagagaaggtttgttctcagctgctgga |
117 |
Q |
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| T |
13397709 |
attggcaggacttagtgtagaatcaggccatttaaaaaattggactaagccaagaacaaattgctacgccatcagagaaggtttgttctcagcagctgga |
13397808 |
T |
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| Q |
118 |
gtgtttgctttaacaacagttttcttagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgttggaagagagg |
217 |
Q |
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| T |
13397809 |
gtgtttgctttaacaacagttttcatagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgttggaagagagg |
13397908 |
T |
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| Q |
218 |
ttctagaagcttctaatttctttgcttttcgaccaagatcacctcaaaggcatatcacaactgttgcaagggagaaccctaaaacaatagagtcaataaa |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397909 |
ttctagaagcttctaatttctttgcttttccaccaagatcacctcaaaggcatatcacaactgttgcaagggagaaccctaaaacaatagagtcaataaa |
13398008 |
T |
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| Q |
318 |
tttgtagagagtatagtttgatcctttg |
345 |
Q |
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| T |
13398009 |
tttgtagagagtatagtttgatcctttg |
13398036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 13394514 - 13394807
Alignment:
| Q |
18 |
attggcaggacttagtgtagaatcaggccatttaaacaattggactaagccaagaacaaattgctacgccatcagagaaggtttgttctcagctgctgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
13394514 |
attggcaggacttagtgtagaatcaggccatttaaaaaattggactaagccaagaacaaattgctacaccatcagagaaggtttgttctcagctgcagga |
13394613 |
T |
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| Q |
118 |
gtgtttgctttaacaacagttttcttagctgctggattatacctaacaatacttcgtgcacaaagaatgtcagaggtggtagcaactgttggaagagagg |
217 |
Q |
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| T |
13394614 |
gtgtttgctttaacaacagttttcctagctgctggtttatacctaacagcacttcgtgcacaaagaatgtctgaggagcttgcaattgttagaagagagg |
13394713 |
T |
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| Q |
218 |
ttctagaagcttctaatttctttgcttttcgaccaagatcacc------tcaaaggcatatcacaactgttgcaagggagaaccctaaaacaat |
305 |
Q |
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|||| |||||||||| || | ||||| || |||||||||||| |||||| ||||| ||||||||||||| |||||||||| |||||| |
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| T |
13394714 |
ttcttgaagcttctaccttttatgcttctccaccaagatcacctcaaagtcaaagacatatttcaactgttgcaagagagaaccctacaacaat |
13394807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 9058331 - 9058244
Alignment:
| Q |
29 |
ttagtgtagaatcaggccatttaaacaattggactaagccaagaacaaattgctacgccatcagagaaggtttgttctcagctgctgg |
116 |
Q |
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||||||||||||| ||||||||||| |||||| |||| | ||||||| || ||| || |||||||||||||||||||||||||||| |
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| T |
9058331 |
ttagtgtagaatcgggccatttaaaaaattggtctaatcatagaacaacctgatacaccgtcagagaaggtttgttctcagctgctgg |
9058244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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