View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_16 (Length: 350)
Name: NF10602_low_16
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 33221956 - 33221630
Alignment:
| Q |
18 |
tatcaatcctttggcttgcaattaaagcaacttctaggggttcagattctctccatttggataggaaaatgcactccgttctcttttaaattcacatgac |
117 |
Q |
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| T |
33221956 |
tatcaatcctttggcttgcaattaaagcaacttctaggggttcagattctctccatttggataggaaaatgcactccgttctcttttaaattcacatgac |
33221857 |
T |
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| Q |
118 |
acatggccctaatagaaattgatgaaagaaaagtaaacgaatc--atacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgc |
215 |
Q |
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| T |
33221856 |
acatggccctaatagaaattgatgaaagaaaagtaaacgaatcatatacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgc |
33221757 |
T |
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| Q |
216 |
catctcctgtcnnnnnnnnnnnnnngaagaagacttagatgtcacggaatcaaataaaattgcagaagaataacacttattttctcttttaagttgcaaa |
315 |
Q |
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| T |
33221756 |
catctcctgtcaaaaaaggaaaaaagaagaagacttagatgtcacggaatcaaataaaattgcagaagaataacacttattttttcttttaagttgcaaa |
33221657 |
T |
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| Q |
316 |
attacaaggcaaatccttcttcatctc |
342 |
Q |
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| T |
33221656 |
attacaaggcaaatccttcttcatctc |
33221630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 342
Target Start/End: Complemental strand, 33229704 - 33229624
Alignment:
| Q |
261 |
ggaatcaaataaaattgcagaagaataacacttattttctcttttaagttgcaaaattacaaggcaaatccttcttcatctc |
342 |
Q |
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||||||||||||| |||| |||||||||||||||| ||||||||| || | |||||||||||| ||| |||||||||||| |
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| T |
33229704 |
ggaatcaaataaatttgctgaagaataacacttatcttctcttttgaggtaggaaattacaaggc-aattcttcttcatctc |
33229624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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