View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_19 (Length: 343)
Name: NF10602_low_19
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 15287989 - 15288302
Alignment:
| Q |
16 |
tcaacaccatgcactagaaatggggaccaatacaaagaaaaggtagcattatgagaaggaaagtgccacttacgaaatttattggacttgccatcttggt |
115 |
Q |
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| T |
15287989 |
tcaacaccatgcactagaaatggggaccaatacaaagaaaaggtagcattatgagaaggaaagtgccacttacgaaatttattggacttgccatcttggt |
15288088 |
T |
|
| Q |
116 |
aaacaaggttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15288089 |
aaacaaggttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttctt |
15288188 |
T |
|
| Q |
216 |
aatgagtttgaggaaagtgtttggttcaaatcttggtagattacactcacttggcttccatctccaataaagataacctaaatcaggtctaccatttgtg |
315 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15288189 |
aatgagattgaggaaagtgtttggttcaaaccttggtagattacactcacttggcttccatctccaataaagataacctaaatcaggtctaccatttgtg |
15288288 |
T |
|
| Q |
316 |
atgcatctctcact |
329 |
Q |
| |
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|||||||||||||| |
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| T |
15288289 |
atgcatctctcact |
15288302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 28 - 320
Target Start/End: Original strand, 15265849 - 15266141
Alignment:
| Q |
28 |
actagaaatggggaccaatacaaagaaaaggtagcattatgagaaggaaagtgccacttacgaaatttattggacttgccatcttggtaaacaaggttag |
127 |
Q |
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|||| |||||| ||||||||||| |||| ||| | ||| | |||| ||||| |||| || ||||| |||| |||||||| |||||| ||||| |||| |
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| T |
15265849 |
actaaaaatggagaccaatacaaggaaatggttgaattgtatgaagaaaagtaccacctagaaaattgattgtccttgccattttggtacacaagtttag |
15265948 |
T |
|
| Q |
128 |
gtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtttgag |
227 |
Q |
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| T |
15265949 |
gaattgaagtagttgctaacatacaaagaagagactctaattggttcctagctaaagaatcaccaacaaaagcaatgtgtttgttcttactaagttggag |
15266048 |
T |
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| Q |
228 |
gaaagtgtttggttcaaatcttggtagattacactcacttggcttccatctccaataaagataacctaaatcaggtctaccatttgtgatgca |
320 |
Q |
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|||||||| |||||||| ||||| || || || ||| |||| ||||||||||||||||||||| | |||||||||| |||| ||| ||||| |
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| T |
15266049 |
aaaagtgttaggttcaaaccttggaagtttgcattcatttggtttccatctccaataaagataatcagaatcaggtctcccatgtgtcatgca |
15266141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 114 - 310
Target Start/End: Original strand, 15257416 - 15257612
Alignment:
| Q |
114 |
gtaaacaaggttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttc |
213 |
Q |
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||||||||| | |||||||||| | | ||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||| || |||||||| |
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| T |
15257416 |
gtaaacaagatcaggtgttgaaacactagataacaaacaaagaagtgactctaactggttcctagccatagaatcaccaacaaaagccatgtgtttgttt |
15257515 |
T |
|
| Q |
214 |
ttaatgagtttgaggaaagtgtttggttcaaatcttggtagattacactcacttggcttccatctccaataaagataacctaaatcaggtctaccat |
310 |
Q |
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| T |
15257516 |
tcaatgaattgaagaaaagtgttaggctcaaaccttggaagcttacattcacttggtttccatctccagtatagataaccagaatctggtcttccat |
15257612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 15262332 - 15262178
Alignment:
| Q |
124 |
ttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtt |
223 |
Q |
| |
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|||||| ||||| ||| ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| ||| ||| |||| || | |||| |
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| T |
15262332 |
ttaggttttgaaacagttgataacatgcaaagaagagactcaaattggtttctagctaaagaatctccaacaaaagatatgtgtctgtttttgcttagtt |
15262233 |
T |
|
| Q |
224 |
tgaggaaagtgtttggttcaaatcttggtagattacactcacttggcttccatct |
278 |
Q |
| |
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||| ||||||||||||||||| ||||| || || |||||| |||| |||||||| |
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| T |
15262232 |
ggagaaaagtgtttggttcaaaccttggaagtttgcactcatttggtttccatct |
15262178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 15274600 - 15274466
Alignment:
| Q |
150 |
gcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtttgaggaaagtgtttggttcaaatctt |
249 |
Q |
| |
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||||| ||| ||||||| |||||||||||| ||||| ||||||||||||||||| | |||| || |||||| | || ||||||||||||||||| || |
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| T |
15274600 |
gcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgtttggttcaaaaatt |
15274501 |
T |
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| Q |
250 |
ggtagattacactcacttggcttccatctccaata |
284 |
Q |
| |
|
|| |||| |||||| |||| |||||||||||||| |
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| T |
15274500 |
ggaagatcacactcctttggtttccatctccaata |
15274466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 15262424 - 15262360
Alignment:
| Q |
20 |
caccatgcactagaaatggggaccaatacaaagaaaaggtagcattatgagaaggaaagtgccac |
84 |
Q |
| |
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|||| ||||| |||||||| |||||||||| ||| || || ||||| ||||||||||| |||||| |
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| T |
15262424 |
caccttgcacaagaaatggcgaccaatacacagataatgttgcattgtgagaaggaaaatgccac |
15262360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 283
Target Start/End: Complemental strand, 51383012 - 51382853
Alignment:
| Q |
124 |
ttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtt |
223 |
Q |
| |
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|||||| |||||| ||| ||||| | ||| | ||| ||||| | ||||||||||| ||||| |||||||||||||||||||| |||| || ||||||| |
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| T |
51383012 |
ttaggttttgaagcagtggataataagcatataagggactcaatttggttcctagataaagagtctccaacaaaagctatatgcatgttgttgatgagtt |
51382913 |
T |
|
| Q |
224 |
tgaggaaagtgtttggttcaaatcttggtagattacactcacttggcttccatctccaat |
283 |
Q |
| |
|
| || || |||||||||||||| ||| |||| |||||||||||| ||||||||||||| |
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| T |
51382912 |
taagaaatgtgtttggttcaaaatttgaaagatgacactcacttggtttccatctccaat |
51382853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 44248765 - 44248899
Alignment:
| Q |
150 |
gcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtttgaggaaagtgtttggttcaaatctt |
249 |
Q |
| |
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||||| ||| ||||||| |||||| | || ||||| ||||||||||||||||| | |||| || |||||||| || ||||||||||||||||| || |
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| T |
44248765 |
gcaaataagggactctatttggttatttgctaaagagtctccaacaaaagctatgttcatgtttttgatgagtttaagaaaagtgtttggttcaaaaatt |
44248864 |
T |
|
| Q |
250 |
ggtagattacactcacttggcttccatctccaata |
284 |
Q |
| |
|
|| |||| |||||||||||| |||||||||||||| |
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| T |
44248865 |
ggaagatcacactcacttggtttccatctccaata |
44248899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 11807657 - 11807817
Alignment:
| Q |
124 |
ttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagtt |
223 |
Q |
| |
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|||||| ||||| ||| ||||| | ||||| ||| ||||||| ||||||||||| ||||| |||||||||||| |||| | |||| | ||||||| |
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| T |
11807657 |
ttaggttttgaaacagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcatgttgctcatgagtt |
11807756 |
T |
|
| Q |
224 |
tgaggaaagtgtttggttcaaatcttggtagattacactcacttggcttccatctccaata |
284 |
Q |
| |
|
| || ||||||||||| ||||| |||| |||| ||||||| |||| |||||||||||||| |
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|
| T |
11807757 |
taagaaaagtgtttgggtcaaaaattggaagatcacactcatttggtttccatctccaata |
11807817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 42525290 - 42525216
Alignment:
| Q |
123 |
gttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaa |
197 |
Q |
| |
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|||||||||||||||| | || ||||| || ||||||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
42525290 |
gttaggtgttgaagtaattgacaacatacatagaagtgactcaaattggttcatagccaaagaatcagcaacaaa |
42525216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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