View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_21 (Length: 334)
Name: NF10602_low_21
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 29554302 - 29554617
Alignment:
| Q |
1 |
gggaagaagcggaagaggaaaggggacgaatcgagctaccgtgttaacttatgataatgagtggtattgtgagcgatgtacctatgcaaacgtcggatct |
100 |
Q |
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| T |
29554302 |
gggaagaagcggaagaggaaaggggacgaatcgagctaccgtgttaacttatgataatgagtggtattgtgagcgatgtacctatgcaaacgtcggatct |
29554401 |
T |
|
| Q |
101 |
gccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtc |
200 |
Q |
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| T |
29554402 |
gccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtc |
29554501 |
T |
|
| Q |
201 |
agtgacgcactataaacacatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554502 |
agtgacgcactataaacaaatgtcttctgctcaaaggcctgtcagatgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaa |
29554601 |
T |
|
| Q |
301 |
tgctaaactatatgaa |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
29554602 |
tgctaaactatatgaa |
29554617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 29539494 - 29539731
Alignment:
| Q |
11 |
ggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgatgtacctatgcaaacgtcggatctg |
101 |
Q |
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||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29539494 |
ggaagaggaaaggggacaaatcgagctaccgtgtccagcaaaataaccgttgataatgagtggtattgtgttgaatgtacctatgcaaacgtcggatctg |
29539593 |
T |
|
| Q |
102 |
ccactgaatgcgccatgtgcgatgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtca |
201 |
Q |
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| T |
29539594 |
ccactgcttgcgccatgtgcagtgagtggtcttgtgggcaatgtacctatgcaaacatcggatctgccacagcatgcgcggtgtgcaatcaacagcgtca |
29539693 |
T |
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| Q |
202 |
gtgacgcactataaacacatgtcttctgctcaaaggcc |
239 |
Q |
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|||| ||||| ||||||||| ||||| |||||||||| |
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| T |
29539694 |
atgacccactagaaacacatgccttctactcaaaggcc |
29539731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 29556787 - 29556851
Alignment:
| Q |
246 |
atgttagtttagagtctattatgttttatttatattcttttatatcttttcgtaatgctaaacta |
310 |
Q |
| |
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| T |
29556787 |
atgtttgtttagaatccataaggttttatttatattcttttatacccttttgtaatgttaaacta |
29556851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 42194847 - 42194963
Alignment:
| Q |
123 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtgcaatcaacagcgtcagtgacgcactataaacacatg |
222 |
Q |
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||||||||||||||||| |||| || |||||||| || ||||||| ||| | ||||| ||||||||||||| |||| || |||| ||||||||||||||| |
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| T |
42194847 |
atgagtggtcttgtgagcaatgtacctatgcaaatgttggatctgccaccgcatgcgcgatgtgcaatcaagagcggcaatgacccactataaacacatg |
42194946 |
T |
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| Q |
223 |
tcttctgctcaaaggcc |
239 |
Q |
| |
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||||||||||||||||| |
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| T |
42194947 |
tcttctgctcaaaggcc |
42194963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 42194786 - 42194911
Alignment:
| Q |
2 |
ggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgatgtacctatgcaaacg |
92 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||| | |
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| T |
42194786 |
ggaaaaagcggaagaggaaaggggacgaa---agctaccgtgtccagcagattaactgatgataatgagtggtcttgtgagcaatgtacctatgcaaatg |
42194882 |
T |
|
| Q |
93 |
tcggatctgccactgaatgcgccatgtgc |
121 |
Q |
| |
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| ||||||||||| | |||||| |||||| |
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| T |
42194883 |
ttggatctgccaccgcatgcgcgatgtgc |
42194911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42780347 - 42780219
Alignment:
| Q |
1 |
gggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgatgtacctatgcaaac |
91 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||||||||||| |
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| T |
42780347 |
gggaagaagtggaagaggaaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaac |
42780248 |
T |
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| Q |
92 |
gtcggatctgccactgaatgcgccatgtg |
120 |
Q |
| |
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|||||||||||||||| ||| || ||||| |
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| T |
42780247 |
gtcggatctgccactgcatgtgcgatgtg |
42780219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 42780282 - 42780152
Alignment:
| Q |
123 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatg-----cgtgatgtgcaatcaacagcgtcagtgacgcactataaac |
217 |
Q |
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||||||||||||||||| |||| || ||||||||||||||||||| ||||| ||| ||| |||| ||||||||| |||| |||| ||||| ||| |
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| T |
42780282 |
atgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgtaatcaacagtgtcaatgacccactacaaaa |
42780183 |
T |
|
| Q |
218 |
acatgtcttctgctcaaaggcctgtcagatg |
248 |
Q |
| |
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| ||||||| || |||||||| ||| ||||| |
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| T |
42780182 |
aaatgtcttttgttcaaaggcttgttagatg |
42780152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 44374663 - 44374699
Alignment:
| Q |
254 |
ttagagtctattatgttttatt-tatattcttttata |
289 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
44374663 |
ttagagtctattatgttttattatatattcttttata |
44374699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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