View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_22 (Length: 333)
Name: NF10602_low_22
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 2556291 - 2555986
Alignment:
| Q |
19 |
aacgatgcttaaatcgagtccttcaactcacattcgagctccgaaatcatcgacatgcttgcaaaatacacctactacgatgaaaacaatgataatgagg |
118 |
Q |
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| T |
2556291 |
aacgatgcttaaatcgagtccttcaactcacattcgagctccgaaatcatcgacatgcttccaaaatacacctactacgatgaaaacaatgataatgagg |
2556192 |
T |
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| Q |
119 |
ttgagggg-ttgtttgatctcctcctgaaaaatgaaactttttcagatttttgccatttgtagtattgtggtgctatccaattgagaaagtgaaacatga |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556191 |
ttgagggggttgtttgatctcctcctgaaaaatgaaactttttcagatttttgtcatttgtagtattgtggtgctatccaattgagaaagtgaaacatga |
2556092 |
T |
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| Q |
218 |
agctggagatttatttcggtggtttcttccattacgacgatgttaaggacaaccatggaagcggcaactatggattcatcaccggtgagaatggtcttgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2556091 |
agctggagatttatttcggtggtttcttccattacgacgatgttaaggacaaccatggaagcggcaactatggattcatcaccggtgagaatggtcttgc |
2555992 |
T |
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| Q |
318 |
cctttg |
323 |
Q |
| |
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|||||| |
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| T |
2555991 |
cctttg |
2555986 |
T |
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