View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_23 (Length: 328)

Name: NF10602_low_23
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_23
NF10602_low_23
[»] chr2 (2 HSPs)
chr2 (181-294)||(40900630-40900743)
chr2 (181-285)||(6706229-6706334)
[»] chr3 (2 HSPs)
chr3 (20-100)||(8014520-8014600)
chr3 (97-161)||(8015704-8015769)
[»] chr5 (1 HSPs)
chr5 (181-285)||(40681621-40681726)
[»] chr7 (1 HSPs)
chr7 (207-285)||(21590207-21590285)
[»] chr6 (1 HSPs)
chr6 (182-285)||(2239220-2239323)
[»] chr1 (1 HSPs)
chr1 (181-285)||(15496621-15496726)
[»] scaffold0092 (1 HSPs)
scaffold0092 (181-281)||(23656-23752)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 294
Target Start/End: Complemental strand, 40900743 - 40900630
Alignment:
Q  181 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtga 280  Q
    ||||||||| |||| |||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||| ||||||| |||||||| |||    
T  40900743 gtccgcatcactcggccaccggtttctctcagcggttgttttctccatcgttgacattcatggtgatgttagtttgctgtgtttttgtggtggtttatga 40900644  T
Q  281 tggttctctgtggg 294  Q
    ||||| || |||||    
T  40900643 tggttttcagtggg 40900630  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 6706334 - 6706229
Alignment:
Q  181 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcg-tttttgcggtggtttgtg 279  Q
    ||||||||| |||| |||||| |||||||||||  | ||||| |||||||   |  ||||||||| ||||||||| ||||| |||||| | |||||||||    
T  6706334 gtccgcatcactcggccaccggtttctctcagcaattgttttctccatcgcccgtgttcatggtggtgttagtttgctgcgttttttgtgatggtttgtg 6706235  T
Q  280 atggtt 285  Q
    ||||||    
T  6706234 atggtt 6706229  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 8014520 - 8014600
Alignment:
Q  20 caatgccaaaaatcaagaagggtggattattttattttattctttgacaaagaagggtggattatttaatggggaagaaat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||    
T  8014520 caatgccaaaaatcaagaaaggtggattattttattttattttttgacaaagaagaggggattatttaaaggggaagaaat 8014600  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 8015704 - 8015769
Alignment:
Q  97 aaatccatgtaaacagaaatctaatgtttttct-aaggaaaatataatgttaattatctatttatt 161  Q
    |||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8015704 aaattcatgtaaacggaaatctaatgttttttttaaggaaaatataatgttaattatctatttatt 8015769  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 40681726 - 40681621
Alignment:
Q  181 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcg-tttttgcggtggtttgtg 279  Q
    ||||||||| |||| |||||| |||||||||||||| ||||| ||||||| | || ||||||||| ||||||||| ||||| |||||| |||||||||||    
T  40681726 gtccgcatcactcggccaccggtttctctcagcggttgttttatccatcgctcgcgttcatggtggtgttagtttgctgcgttttttgtggtggtttgtg 40681627  T
Q  280 atggtt 285  Q
    ||||||    
T  40681626 atggtt 40681621  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 21590207 - 21590285
Alignment:
Q  207 tctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtgatggtt 285  Q
    |||||||||| ||||| |||||| || || ||||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  21590207 tctcagcggttgttttctccatctttagcgttcatggtggtgttagtttgctgcgtttttgtggtgatttgtgatggtt 21590285  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 2239323 - 2239220
Alignment:
Q  182 tccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtgat 281  Q
    |||||||| |||| ||| || |||||||||||||| ||||| || ||| ||  | ||||||||| ||||||||| |||  |||||| |||||||||||||    
T  2239323 tccgcatcactcggccatcggtttctctcagcggttgttttatcaatcattaacgttcatggtggtgttagtttgctgtatttttgtggtggtttgtgat 2239224  T
Q  282 ggtt 285  Q
    ||||    
T  2239223 ggtt 2239220  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 15496726 - 15496621
Alignment:
Q  181 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgc-ggtggtttgtg 279  Q
    ||||||||| |||| |||| | |||||||||| ||| ||||| ||||||| | || ||||||||| ||||||||| || |||||||   |||||||||||    
T  15496726 gtccgcatcactcggccactggtttctctcagtggttgttttctccatcgctcgcgttcatggtggtgttagtttgctacgttttttttggtggtttgtg 15496627  T
Q  280 atggtt 285  Q
    ||||||    
T  15496626 atggtt 15496621  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 23752 - 23656
Alignment:
Q  181 gtccgcatctctcgaccaccgatttctctcagcggtagttttttccatcgttggcattcatggtgatgttagtttactgcgtttttgcggtggtttgtga 280  Q
    ||||||||  |||| |||||| |||||||||| ||| ||||| |||||| ||||| ||||| ||| | ||||||    ||||||||| ||||||||||||    
T  23752 gtccgcattactcggccaccggtttctctcagtggttgttttctccatcattggcgttcattgtggttttagtt----gcgtttttgtggtggtttgtga 23657  T

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