View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_low_24 (Length: 326)
Name: NF10602_low_24
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 55070884 - 55070636
Alignment:
| Q |
16 |
cctatatcaatttatcctcttgcatttaatgtaaagagatacaactgaaatagttttcgctacctcatctctgaataattcattgactttatcaacatcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55070884 |
cctatatcaatttatcctcttgcatttaatgtaaagagatacagctgaaatagttttcgctacctcatctctgaataattcatggactttatcaacatcc |
55070785 |
T |
|
| Q |
116 |
aatcttttcttcccatctcacatcaactgattgacaaacatattatacacaccttggttggttgtgtggggagtgcatctactttccttggttcccctga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55070784 |
aatcttttcttcccatctcacatcaactgattgacaaacata---------------ttggttgtgtggggagtgcatctactttccttggttcccctga |
55070700 |
T |
|
| Q |
216 |
agccaaaaatctgacatgattctgtcacttataattaatataatagaagtggtaaatactcacg |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55070699 |
agccacaaatctgacatgattctgtcacttataattaatataatagaagtggtaaatactcacg |
55070636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 55070590 - 55070561
Alignment:
| Q |
297 |
ggtatgaagaatcgatttaatcatcgcttc |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55070590 |
ggtatgaagaatcgatttaatcatcgcttc |
55070561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University