View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_25 (Length: 317)
Name: NF10602_low_25
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 38841118 - 38840828
Alignment:
| Q |
17 |
caagtaaaccagcaaacaaagagaaaaaataccatgagctttactaacnnnnnnncaatcataagctcctctagaaaaccactactac-cccaatcataa |
115 |
Q |
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| T |
38841118 |
caagtaaaccagcaaacaaagagaaaaaataccatgagctttacaaacaaaaaaacaatcataagctcctctagaaaaccactactactcccaatcataa |
38841019 |
T |
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| Q |
116 |
gcaagcaattttctcccaatcttttgataagagtatacatcaatagtagcggttttaacaagttctgtgaaatgtttacagttttcccaatcatagaaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38841018 |
gcaagcaattttctcccaatcttttgataagagtaaacattaatagtagcggttttaacaagttctgtgaaatgtttacggttttcccaatcatagaaga |
38840919 |
T |
|
| Q |
216 |
tgcgtaaaggcctttggtttcgaagagaaagcccagtgaccacagaaagcagttcatcaacaccgatataagccaaacgaggtttcttcat |
306 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38840918 |
tgcgtacaggcctttggtttcgaagagaaagcccagtgaccacagaaagcagctcatcaacaccgatataagccaaacgaggtttcttcat |
38840828 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 17198089 - 17198137
Alignment:
| Q |
117 |
caagcaattttctcccaatcttttgataagagtatacatcaatagtagc |
165 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||| || |||||| |
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| T |
17198089 |
caagcaatttactcccaatcttatgataagagtaaacattaacagtagc |
17198137 |
T |
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