View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_26 (Length: 316)
Name: NF10602_low_26
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 698826 - 698523
Alignment:
| Q |
2 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatattagtaatttgctaattttatgtattaagcaaaacaact |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
698826 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatactagtaatttgctaattttatgtattaagcaaaacaact |
698727 |
T |
|
| Q |
102 |
taatataagaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatagggcaatagtactttccgagcttcatcgcca |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
698726 |
taatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcgcca |
698627 |
T |
|
| Q |
202 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
698626 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
698527 |
T |
|
| Q |
302 |
atgc |
305 |
Q |
| |
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|||| |
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|
| T |
698526 |
atgc |
698523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 767124 - 766821
Alignment:
| Q |
2 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatattagtaatttgctaattttatgtattaagcaaaacaact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
767124 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatactagtaatttgctaattttatgtattaagcaaaacaact |
767025 |
T |
|
| Q |
102 |
taatataagaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatagggcaatagtactttccgagcttcatcgcca |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
767024 |
taatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcgcca |
766925 |
T |
|
| Q |
202 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766924 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
766825 |
T |
|
| Q |
302 |
atgc |
305 |
Q |
| |
|
|||| |
|
|
| T |
766824 |
atgc |
766821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 305
Target Start/End: Original strand, 36963109 - 36963412
Alignment:
| Q |
2 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatattagtaatttgctaattttatgtattaagcaaaacaact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
36963109 |
cttaaaacaaacacactttgaattgtatgtacttaatatgtaacattatattacccatatactagtaatttgctaattttatgtattaagcaaaacaact |
36963208 |
T |
|
| Q |
102 |
taatataagaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatagggcaatagtactttccgagcttcatcgcca |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
36963209 |
taatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcgcca |
36963308 |
T |
|
| Q |
202 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963309 |
tttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagagcct |
36963408 |
T |
|
| Q |
302 |
atgc |
305 |
Q |
| |
|
|||| |
|
|
| T |
36963409 |
atgc |
36963412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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