View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_low_28 (Length: 313)
Name: NF10602_low_28
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 11027177 - 11026998
Alignment:
| Q |
18 |
atctgtggctgttcatctgtttnnnnnnntttaaaatgggtaaacctttgcagtacaaaatgtcaacatcaagaaaattaacttaacatctatgagtnnn |
117 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11027177 |
atctgtggctgttcacctgtttaaaaaaaattaaaatgg-taaacctttgcagtacaaaatgtcaacatcaagaaaattaacttaaaatctatgagtaaa |
11027079 |
T |
|
| Q |
118 |
nnnnccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11027078 |
aaaaccccaagatctatatgataagctcctccactttagcatttacttaatttggtgctattctaatgtcaatttgattga |
11026998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 11026960 - 11026882
Alignment:
| Q |
235 |
tatatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11026960 |
tatatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagtagttgcagttgc |
11026882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 10907415 - 10907349
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagta |
302 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||||||| | || |||| |||||||||| |
|
|
| T |
10907415 |
atattttacaattgtaagtcattctaactcttgaattacatctaactcttgagttagttgtctagta |
10907349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 10931299 - 10931233
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaaattgtgggttacttgtctagta |
302 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| || | || |||| |||||||||| |
|
|
| T |
10931299 |
atattttacaattgtaagtcaatctaactcttgaattacatccaactcttgagttagttgtctagta |
10931233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 10993503 - 10993459
Alignment:
| Q |
236 |
atatttcacaattgtaagtcaatctatctcttgaattacatctaa |
280 |
Q |
| |
|
|||||| |||||||||||||| || | |||||||||||||||||| |
|
|
| T |
10993503 |
atattttacaattgtaagtcattccaactcttgaattacatctaa |
10993459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University