View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_3 (Length: 452)
Name: NF10602_low_3
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 34830605 - 34830173
Alignment:
| Q |
1 |
ggttgttgaacctatatcaagagaaatgaagaagctaatatttctttttctttataccaaaatatttgttaatgagctatatcttagggtaaagaattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830605 |
ggttgttgaacctatatcaagagaaatgaagaagctaatatttctttttctttataccaaaatatttgttaatgagctatatcttagggtaaagaattca |
34830506 |
T |
|
| Q |
101 |
tcacatatatataacnnnnnnntgggacagttttcctacttgtatgaagcaagtcacattcttgcccatacgaaattatcgccaccattttccatcttac |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830505 |
tcacatatatataacaaaaaaatgggacagttttcctacttgtatgaagcaagtcacattcttgcccatacgaaattatcgccaccattttccatcttac |
34830406 |
T |
|
| Q |
201 |
ttcatccgtcttactatacaactcaccctaccccattaattaatgtgtgcacaatatttttgtagcaaaacaaaattattaaatgagaatataataatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830405 |
ttcatccgtcttactatacaactcaccctaccccattaattaatgtgtgcacaatatttttgtagcaaaacaaaattattaaatgagaatataataatga |
34830306 |
T |
|
| Q |
301 |
gtagtgtcnnnnnnnatcaaaaaatactaataatgactagtgtctgtgtcctgtaaatatccttcagttaaaatagaatttaatataatttatcagacat |
400 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34830305 |
gtagtgtctttttttatcaaaaaatactaataatgactagtgtctgtgtcctgtaaatatccttcagttaaaatagaatttaacataatttatcggacat |
34830206 |
T |
|
| Q |
401 |
tcttaataatttgtttatcactgtcctaccgta |
433 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| |
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|
| T |
34830205 |
tcttaacaatttgtttatgactgtcctaccgta |
34830173 |
T |
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