View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_35 (Length: 301)
Name: NF10602_low_35
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 12945330 - 12945614
Alignment:
| Q |
1 |
gagatgaacgtcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaaacatttatcaaagtccacatggtctctg |
100 |
Q |
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| T |
12945330 |
gagatcaaggtcgagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaagcatttatcaaagtccacgtggtctctg |
12945429 |
T |
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| Q |
101 |
atccatggatcagattccgttggattttgagcttgggatttgagccagagaagagaatcaactgcatcatcgtaggctgctgggaggcgatgctcaggcg |
200 |
Q |
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| T |
12945430 |
atccatggatcagattctgttggattttgagcttgggatttgagccagagaagagaatcaactgcatcatcgtaggctgctgggaggcgatgctcaggcg |
12945529 |
T |
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| Q |
201 |
agagacgataatcaaccgaggcaacaatggcaggaatttgagcagctaatgtagagcagggatggtggaaaatgagcgaggaagg |
285 |
Q |
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| T |
12945530 |
agagacgataatcaacggaggcaacaatggcaggaatttgagcagctaatgtagagcaggggtggtggaaaatgagcgaggaagg |
12945614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 12937667 - 12937884
Alignment:
| Q |
10 |
gtcaagagcacgtagacctgcgaaataggctatgttacctccggcactgtctcccatcaagaaacatttatcaaagtccacatggtctctgatccatgga |
109 |
Q |
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| T |
12937667 |
gtcaagagcacgtagacctgcgaagtacgctatgttacctcctgcactacttcccatcaagaagcagttatcaaagtccacgttgtctctgatccatgga |
12937766 |
T |
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| Q |
110 |
tcagattccgttggattttgagcttgggatttgagccagagaagagaatcaactgcatcatcgtaggctgctgggaggcgatgctcaggcgagagacgat |
209 |
Q |
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| T |
12937767 |
tcagagacacttggattttgtgcttgggctctgagccagaacaatgaatcaatagcgtcatcataggcagcagggagacggtgctctggagtgagacgat |
12937866 |
T |
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| Q |
210 |
aatcaaccgaggcaacaa |
227 |
Q |
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| T |
12937867 |
gagcaactgaggctacaa |
12937884 |
T |
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