View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10602_low_37 (Length: 292)
Name: NF10602_low_37
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 41804136 - 41803878
Alignment:
| Q |
22 |
gtccaaatcatttgttcgagctatcataaggtgatatacaaaaatcatagcatattttgcatcacgagcttccatcatatgacaattcagaagtcatggt |
121 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41804136 |
gtccaaatcatttgttcgagctaccataaggtgatatacaaaaatcatagcatattttgcatcgcgagcttccatcatatcacaattcagaagtcatggt |
41804037 |
T |
|
| Q |
122 |
gcatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatag |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41804036 |
acatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgataagattgataacagatag |
41803937 |
T |
|
| Q |
222 |
ttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41803936 |
ttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta |
41803878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
| Q |
209 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt |
268 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
41810603 |
tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt |
41810544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
| Q |
209 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt |
269 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
41796961 |
tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt |
41796901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
| Q |
124 |
atagagattgtacctgctttagctccctggagctgcttttctttatca |
171 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
41795615 |
atagagattgtacctgttttagctccctggagctgctcttctttatca |
41795568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
| Q |
125 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
171 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
41803319 |
tagagattgtaccttttttacctccctggagctgcttttctttatca |
41803273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
| Q |
125 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
171 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
41810301 |
tagagattatacctgttttagctccctgaagctgcttttctttatca |
41810255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University