View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_38 (Length: 292)
Name: NF10602_low_38
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_38 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 7510039 - 7509785
Alignment:
| Q |
2 |
tttcatttgattaataacaaattcaatcccatgaatctttctttnnnnnnntattcaatcacacgattcacatcagtaatattttaataattcatcattt |
101 |
Q |
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| T |
7510039 |
tttcatttgattaataacaaattcaatcacatgaatctttctttaaaaaaatattcaatcacatgattcacatcagtaatattttaataattcatcattt |
7509940 |
T |
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| Q |
102 |
atattttattatcaaacccatacatatcgattaattaatacaccaaattagtagtgtaagctttgcaaccaatggattaaagctaaatctatctatcacc |
201 |
Q |
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| T |
7509939 |
atattttattatccaacccatacatatcgattaattaatacaccaaattagtagtgtaagctttgcaaccaatggattaaagctaaatctatctatcacc |
7509840 |
T |
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| Q |
202 |
atcggtaagggttgacagacttccaagaaaggaagaaaaaatttcagtaaaatat |
256 |
Q |
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| T |
7509839 |
atcggtaagggttgacagacttccaagaaaggaagaaaaaattccagtaaaatat |
7509785 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 18097290 - 18097333
Alignment:
| Q |
249 |
taaaatatcactacaataaagaaaacacaatttactgaaaccct |
292 |
Q |
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| T |
18097290 |
taaattatcactacaataaaaaaaacacaatttactgaaaccct |
18097333 |
T |
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