View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_39 (Length: 291)
Name: NF10602_low_39
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 270
Target Start/End: Original strand, 30619595 - 30619843
Alignment:
| Q |
22 |
agatgaacattagcagatatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaat |
121 |
Q |
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| T |
30619595 |
agatgaacattagcagatatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaat |
30619694 |
T |
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| Q |
122 |
gaaacagacctgatgcaggaagggacagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggctttt |
221 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30619695 |
gaaacagacctgatgcaggaagggcaagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggctttt |
30619794 |
T |
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| Q |
222 |
gagtttccaaccgcatttgaattatcctgtttcttctgccagaaacgaa |
270 |
Q |
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| T |
30619795 |
gagtttccaaccgcatttgaattatcctgtttcttctgccagaaacgaa |
30619843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 30627786 - 30628055
Alignment:
| Q |
22 |
agatgaacattagcagatatgattcagttgaactggcacaatatatcattaaacaaataagaaacaaactaattgttaaaaggttacaactctaagcaat |
121 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
30627786 |
agatgaacattagcagagatgattcagttgaactagcacagtatatcattaaacaaataagaaacaaactatttgttaaaaagttacaactctaagcaat |
30627885 |
T |
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| Q |
122 |
gaaacagacctgatgcaggaagggacagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcaccagaggctttt |
221 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
30627886 |
gaaacagacctgatgcaggcagggcaagctacgaagtacatctccaacattaacttgctccaagcatacactgcaagtgagctcatcatcagaggccttt |
30627985 |
T |
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| Q |
222 |
gagtttccaaccgcatttgaattatcctgtttcttctgccagaaacgaaaagaaacgaatcatgaaaacc |
291 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||| |
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| T |
30627986 |
gagtttccaaccgcatttaaattatcctgtgtcttctgccacaaacgaaaagaaatgaatcatgaaaacc |
30628055 |
T |
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