View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_4 (Length: 421)

Name: NF10602_low_4
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_4
NF10602_low_4
[»] chr7 (44 HSPs)
chr7 (21-416)||(13707871-13708266)
chr7 (76-375)||(5530524-5530823)
chr7 (25-378)||(5797904-5798251)
chr7 (175-335)||(31493466-31493626)
chr7 (73-335)||(21232914-21233174)
chr7 (80-341)||(15612063-15612326)
chr7 (173-377)||(1882807-1883007)
chr7 (187-378)||(9500866-9501056)
chr7 (181-378)||(10938167-10938364)
chr7 (195-335)||(11218679-11218819)
chr7 (155-378)||(18495898-18496117)
chr7 (175-335)||(22338799-22338959)
chr7 (157-263)||(18662965-18663069)
chr7 (181-323)||(21884550-21884692)
chr7 (181-341)||(140673-140828)
chr7 (283-407)||(9721586-9721707)
chr7 (217-377)||(1873430-1873586)
chr7 (173-257)||(9917061-9917145)
chr7 (173-257)||(9924973-9925057)
chr7 (205-260)||(2348385-2348440)
chr7 (185-335)||(5222073-5222223)
chr7 (312-378)||(10649963-10650029)
chr7 (173-262)||(21227870-21227959)
chr7 (181-261)||(4901383-4901463)
chr7 (183-295)||(5102024-5102136)
chr7 (201-262)||(5107219-5107280)
chr7 (82-115)||(9890737-9890770)
chr7 (76-137)||(19398464-19398525)
chr7 (181-288)||(20175132-20175240)
chr7 (181-323)||(21911871-21912017)
chr7 (213-261)||(7318915-7318963)
chr7 (217-261)||(18202666-18202710)
chr7 (76-136)||(23588052-23588112)
chr7 (78-137)||(10480369-10480428)
chr7 (74-137)||(21501712-21501774)
chr7 (76-125)||(8157868-8157915)
chr7 (76-137)||(1728013-1728074)
chr7 (175-262)||(6006553-6006639)
chr7 (217-262)||(10941944-10941989)
chr7 (196-257)||(12329935-12329996)
chr7 (200-264)||(9863783-9863847)
chr7 (350-378)||(9917340-9917368)
chr7 (350-378)||(9925252-9925280)
chr7 (38-99)||(21884872-21884935)
[»] chr3 (27 HSPs)
chr3 (27-378)||(27853883-27854232)
chr3 (27-378)||(20885584-20885918)
chr3 (24-214)||(7148375-7148565)
chr3 (80-326)||(820920-821167)
chr3 (190-344)||(22245860-22246014)
chr3 (173-336)||(21018397-21018552)
chr3 (173-378)||(6290363-6290568)
chr3 (206-378)||(13907616-13907788)
chr3 (82-223)||(28729199-28729340)
chr3 (175-333)||(314609-314767)
chr3 (201-262)||(3115877-3115938)
chr3 (175-262)||(8446370-8446458)
chr3 (76-137)||(20398066-20398127)
chr3 (76-137)||(25757168-25757229)
chr3 (73-137)||(8446266-8446330)
chr3 (73-137)||(8144059-8144123)
chr3 (85-137)||(21083703-21083755)
chr3 (201-260)||(16221938-16221997)
chr3 (205-260)||(41509043-41509098)
chr3 (196-262)||(18736133-18736199)
chr3 (203-261)||(21325925-21325983)
chr3 (196-262)||(21825290-21825356)
chr3 (204-245)||(8144193-8144234)
chr3 (217-257)||(12772385-12772425)
chr3 (213-261)||(17156384-17156432)
chr3 (73-137)||(22245750-22245814)
chr3 (79-115)||(25781307-25781343)
[»] scaffold0019 (2 HSPs)
scaffold0019 (49-408)||(26907-27269)
scaffold0019 (200-336)||(183875-184011)
[»] chr8 (17 HSPs)
chr8 (33-378)||(15064712-15065057)
chr8 (81-378)||(5855545-5855842)
chr8 (176-330)||(17977156-17977310)
chr8 (185-378)||(5052275-5052468)
chr8 (76-336)||(24905076-24905337)
chr8 (151-267)||(17965531-17965647)
chr8 (73-223)||(30121655-30121806)
chr8 (85-262)||(14075948-14076123)
chr8 (181-243)||(24119204-24119267)
chr8 (196-257)||(26394166-26394225)
chr8 (78-115)||(12657339-12657376)
chr8 (78-137)||(26614850-26614909)
chr8 (202-260)||(24645418-24645476)
chr8 (290-372)||(30486870-30486952)
chr8 (201-262)||(6885538-6885599)
chr8 (217-262)||(21315222-21315267)
chr8 (217-258)||(25181915-25181956)
[»] chr5 (32 HSPs)
chr5 (31-416)||(23265529-23265912)
chr5 (78-260)||(26252263-26252446)
chr5 (153-336)||(19762660-19762843)
chr5 (73-335)||(17170943-17171207)
chr5 (99-335)||(17470662-17470899)
chr5 (154-335)||(9521318-9521499)
chr5 (203-378)||(26066704-26066879)
chr5 (73-335)||(22871113-22871375)
chr5 (195-335)||(24164433-24164573)
chr5 (223-378)||(26314273-26314428)
chr5 (44-205)||(35985005-35985165)
chr5 (173-265)||(25579331-25579423)
chr5 (100-377)||(19085579-19085849)
chr5 (181-338)||(32448554-32448711)
chr5 (175-334)||(17635827-17635992)
chr5 (177-258)||(24261070-24261151)
chr5 (181-308)||(26308184-26308312)
chr5 (181-323)||(15544632-15544770)
chr5 (219-308)||(35984866-35984957)
chr5 (285-336)||(18416826-18416877)
chr5 (78-115)||(8365300-8365337)
chr5 (173-272)||(17337268-17337368)
chr5 (78-115)||(18750980-18751017)
chr5 (47-101)||(17830427-17830483)
chr5 (213-261)||(24264927-24264975)
chr5 (213-261)||(24341558-24341606)
chr5 (83-137)||(24167112-24167166)
chr5 (82-111)||(15492508-15492537)
chr5 (76-125)||(23031543-23031592)
chr5 (73-137)||(17635724-17635788)
chr5 (77-113)||(23014226-23014262)
chr5 (73-137)||(26314166-26314230)
[»] chr1 (25 HSPs)
chr1 (24-378)||(26810266-26810620)
chr1 (174-377)||(17442770-17442973)
chr1 (76-335)||(34481389-34481649)
chr1 (77-340)||(16787132-16787394)
chr1 (175-335)||(16113449-16113609)
chr1 (27-260)||(27117199-27117421)
chr1 (173-264)||(15299548-15299639)
chr1 (290-376)||(17837901-17837987)
chr1 (201-262)||(15812613-15812674)
chr1 (201-262)||(44795949-44796010)
chr1 (175-262)||(17120964-17121052)
chr1 (181-272)||(7220763-7220852)
chr1 (173-243)||(13134579-13134650)
chr1 (153-262)||(16360400-16360510)
chr1 (218-260)||(28008705-28008747)
chr1 (208-261)||(24281865-24281918)
chr1 (201-262)||(26648498-26648559)
chr1 (217-261)||(33191275-33191319)
chr1 (177-243)||(10825435-10825504)
chr1 (201-272)||(23037463-23037533)
chr1 (214-261)||(25960623-25960670)
chr1 (82-120)||(13134689-13134727)
chr1 (181-322)||(14240183-14240325)
chr1 (73-118)||(21848027-21848072)
chr1 (78-115)||(25534293-25534330)
[»] chr2 (30 HSPs)
chr2 (80-381)||(25939583-25939886)
chr2 (76-344)||(45553577-45553846)
chr2 (73-378)||(26291515-26291821)
chr2 (173-374)||(27418767-27418968)
chr2 (175-337)||(45621307-45621469)
chr2 (173-374)||(27419913-27420114)
chr2 (197-335)||(16075830-16075968)
chr2 (194-338)||(25348567-25348711)
chr2 (210-262)||(23006687-23006739)
chr2 (205-409)||(8502453-8502654)
chr2 (201-336)||(21072158-21072293)
chr2 (181-235)||(41790083-41790137)
chr2 (205-338)||(9239763-9239896)
chr2 (77-137)||(21078214-21078274)
chr2 (290-338)||(24533987-24534035)
chr2 (79-115)||(36357519-36357555)
chr2 (211-262)||(22568190-22568241)
chr2 (200-262)||(13777002-13777064)
chr2 (173-262)||(17890546-17890636)
chr2 (200-262)||(25887356-25887418)
chr2 (201-262)||(19199626-19199687)
chr2 (213-261)||(29031769-29031817)
chr2 (73-137)||(45621473-45621537)
chr2 (181-262)||(30694902-30694983)
chr2 (292-338)||(41789982-41790028)
chr2 (213-262)||(9761899-9761948)
chr2 (349-378)||(25939962-25939991)
chr2 (80-137)||(27418672-27418729)
chr2 (176-243)||(8446569-8446637)
chr2 (210-262)||(23011215-23011267)
[»] scaffold0136 (1 HSPs)
scaffold0136 (26-378)||(14840-15181)
[»] scaffold0044 (1 HSPs)
scaffold0044 (25-212)||(85887-86074)
[»] chr4 (23 HSPs)
chr4 (81-337)||(22526724-22526980)
chr4 (151-378)||(12839140-12839367)
chr4 (173-378)||(11520481-11520686)
chr4 (203-376)||(5529013-5529186)
chr4 (83-267)||(9053119-9053305)
chr4 (182-414)||(1832888-1833117)
chr4 (175-378)||(10782452-10782652)
chr4 (73-335)||(9264404-9264666)
chr4 (181-378)||(18448313-18448508)
chr4 (25-110)||(10777733-10777818)
chr4 (283-407)||(13587853-13587974)
chr4 (201-262)||(9850899-9850960)
chr4 (73-335)||(26115297-26115558)
chr4 (214-262)||(14572406-14572454)
chr4 (316-407)||(23972081-23972169)
chr4 (196-262)||(5956528-5956594)
chr4 (201-263)||(25120686-25120748)
chr4 (205-262)||(17672570-17672627)
chr4 (195-262)||(4215022-4215089)
chr4 (76-137)||(11520723-11520784)
chr4 (185-233)||(20317220-20317269)
chr4 (83-115)||(12462192-12462224)
chr4 (213-261)||(19092894-19092942)
[»] chr6 (19 HSPs)
chr6 (77-344)||(2587154-2587422)
chr6 (80-336)||(9726457-9726713)
chr6 (146-334)||(22564360-22564548)
chr6 (79-335)||(24215984-24216240)
chr6 (181-261)||(23087764-23087844)
chr6 (196-263)||(22849956-22850023)
chr6 (173-338)||(22565555-22565715)
chr6 (173-378)||(14725957-14726162)
chr6 (173-378)||(23645116-23645316)
chr6 (201-336)||(9291466-9291601)
chr6 (205-262)||(4340324-4340381)
chr6 (181-260)||(10504172-10504251)
chr6 (154-262)||(15466895-15467009)
chr6 (217-263)||(22409786-22409832)
chr6 (205-262)||(1635566-1635623)
chr6 (175-261)||(24251702-24251787)
chr6 (207-261)||(19245163-19245217)
chr6 (221-261)||(8245529-8245569)
chr6 (72-120)||(9291675-9291723)
[»] scaffold0128 (1 HSPs)
scaffold0128 (73-264)||(55-248)
[»] scaffold0672 (1 HSPs)
scaffold0672 (175-336)||(4419-4580)
[»] scaffold0005 (1 HSPs)
scaffold0005 (214-262)||(244922-244970)
[»] scaffold0360 (1 HSPs)
scaffold0360 (251-334)||(17529-17612)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-261)||(40205-40248)


Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 416
Target Start/End: Original strand, 13707871 - 13708266
Alignment:
Q  21 actggctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaa 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13707871 actggctcattcccctccagctttcgagttgcacctgctgatcacatagacgtacgtgtggggtcttactgtcttagaggtaattgaaacataaacttaa 13707970  T
Q  121 gttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtag 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13707971 gttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtccgctcatctatgaatcttagaagcacatagcacactctccctcttggtag 13708070  T
Q  221 ttctacaaac-gggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttcctta 319  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||| |    
T  13708071 ttatacaaacggggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttactgagcttatttaagtcgtgaagtcacttatttcctca 13708170  T
Q  320 attactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacctccataagtacctttctctcagggttcttctctct 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  13708171 attactaactagttacttcctggttctagcatatatacatcaatattaggtatgtcacc-cctctataagtacctttctctcagggttcttatctct 13708266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 76 - 375
Target Start/End: Original strand, 5530524 - 5530823
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtc-ccaatgttcttaaaggtctgct 174  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||| || || |||||||||| | | | || |  |  ||| ||||| |||| || | |     
T  5530524 gtgtggggtcttactcgcttaggggtaattaaaacataaacttaaattggcgttcctaaatttccaaatgtatgttggccagtgttcctaaatgttttc- 5530622  T
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||||||||||||||| | | |||||||||||||||||||| |||||||||||||| ||| | ||||||| |  |||||||||||||||||     ||| |    
T  5530623 catctatgaatcttatatgtacataacacactctccctctcggtagttctacaaatgggcacccctatcggcatctaccttaccaaggtgcgtggagaat 5530722  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgt 374  Q
    ||||||  | |||| ||||||||||||||| ||| | ||||||||||||||||||||||||| | || ||  |||| || | |||||||||||| |||||    
T  5530723 ggagttattgggctgatttaagtcgtgaagccacttgtttccttaattactaactagttactgcctgatttcagcagatttgcatcaatattagttatgt 5530822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 25 - 378
Target Start/End: Original strand, 5797904 - 5798251
Alignment:
Q  25 gctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagtta 124  Q
    ||||||||||||| |||| ||||||||||| | || ||||||   |  ||||||||||||||||| |||| |||||||||||||| ||| | |||| ||     
T  5797904 gctcattcccctctagctgtcgagttgcacctactaatcacatgaaattacgtgtggggtcttacgctctcagaggtaattgaaaaatagatttaaattg 5798003  T
Q  125 gctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttct 224  Q
     |||||||||||| | || |||| | ||||||| ||| ||||||| ||   || ||| | ||||||||||||||||||||||||||||||  ||  ||||    
T  5798004 actttcctaaattcccatgagtgaattcccaatcttcctaaaggtatgtctatttataactcttagaagcacataacacactctccctctcagt-tttct 5798102  T
Q  225 acaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattac 324  Q
    ||||||||| ||| |||| || |||||| ||||  |||||||| ||| | |||||| ||  ||| ||||||||| |||      ||  |||||| || ||    
T  5798103 acaaacgggcaacactattagcgtctactttactgaggtgaaataagggcggagttactttgctaatttaagtcatga------ctgcttccttcataac 5798196  T
Q  325 t-aactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    | ||||||||||||| ||  | ||||| ||||| |||||||||||||||||||||    
T  5798197 tcaactagttacttcctgagtttagcagatataaatcaatattaggtatgtcacc 5798251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 31493466 - 31493626
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||| || | ||||||||  |||||||||||||||||   |  ||| |    
T  31493466 catctatgaatcttaggagtacataacacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaaggtttgaggagaat 31493565  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||||||||  ||  ||||||||| |||| |||| | |||||||||||| |||||||||||    
T  31493566 ggagttgctgagccgatttaagtcttgaaatcacttgtttccttaattaataactagttac 31493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 73 - 335
Target Start/End: Original strand, 21232914 - 21233174
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtccc-aatgttcttaaaggtct 171  Q
    |||||||||||| |||||| || || ||||||||||||||| |||||| ||||  |||||||||| | | | || | ||  | ||||||| ||||||| |    
T  21232914 tacgtgtggggtattactccctcagtggtaattgaaacatagacttaaattagtgttcctaaatttccaaaggtatggttgctaatgttcgtaaaggttt 21233013  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaag 271  Q
     | ||||||||||||||||||| ||||| |||||||||||| |   ||||| |||||| | | | ||||||||| |||||||||||||| ||   |  ||    
T  21233014 tcccatctatgaatcttagaagtacatatcacactctcccttt---tagttttacaaatgagcagccctatcagcgtctaccttaccaaagtacgaggag 21233110  T
Q  272 agtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    | |||| || || || | ||||||||||||||||||| | |||| |||||||||||||||||||    
T  21233111 aatggaattactgggttgatttaagtcgtgaagtcacttgtttcgttaattactaactagttac 21233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 341
Target Start/End: Complemental strand, 15612326 - 15612063
Alignment:
Q  80 ggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataag--tgtagtcccaatgttcttaaaggtctgctcat 177  Q
    |||||||||| | |||| |||||||||||||||| |||| | ||||| |||||||||| | | | |  ||   | ||||||||| |||||||   ||| |    
T  15612326 ggggtcttacccgcttaaaggtaattgaaacatagacttcaattagcgttcctaaatttctaaaggcatgacttgccaatgttcctaaaggttccctcct 15612227  T
Q  178 ctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgga 277  Q
    ||||||||||||| |  ||||| || ||| ||| ||| | |||||||||||||||||| ||||||||| |||||| |||||||||||||| || | ||||    
T  15612226 ctatgaatcttagcaatacatagcatactatccttctcgatagttctacaaacgggtagccctatcagcgtctactttaccaaggtgaaagaaaaatgga 15612127  T
Q  278 gttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttg 341  Q
    ||| |   | | |||||||| || ||||||| | |||||||||||||||||| |||||| ||||    
T  15612126 gttaccgagttgatttaagttgtaaagtcacatgtttccttaattactaacttgttactacttg 15612063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 377
Target Start/End: Original strand, 1882807 - 1883007
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||| |||| |||||||||| ||||||||||| ||| ||||| ||||||||| ||||||| | || ||||||||| |||||||| ||||   ||  |||    
T  1882807 ctcatttatggatcttagaagtacataacacacactctctcttagtagttctagaaacgggaagccatatcagtgtataccttacaaagg---aaagaga 1882903  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcaccta-tttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggta 371  Q
     |||||||  | |||| ||||||||||||||||||  || ||||||||||||||||||| ||||| |||| ||  | || || | |||||||||||||||    
T  1882904 atggagttattgggctgatttaagtcgtgaagtca--tagtttccttaattactaactacttactacttgatttcaacagatgttcatcaatattaggta 1883001  T
Q  372 tgtcac 377  Q
    ||||||    
T  1883002 tgtcac 1883007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 378
Target Start/End: Original strand, 9500866 - 9501056
Alignment:
Q  187 ttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctagg 286  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||| ||  |||||||||  ||||||||||||||||||  |  ||| |||||||  | ||    
T  9500866 ttagaagtacataacaaactctccctctcggtagttctacaaac-ggccaccctatcaacgtctaccttaccaaggtgcgaggagaatggagttattggg 9500964  T
Q  287 cttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
     |  |||||||||||||||||| | |||| ||||||||||||||||||   | || ||  |||| || | ||||||||||||||||||||||    
T  9500965 atggtttaagtcgtgaagtcacttgtttcattaattactaactagttataacctgatttcagcagatgttcatcaatattaggtatgtcacc 9501056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 10938167 - 10938364
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    ||||||||||||| |||||||||||||||||| |  | |||||||||||||||||||||||| |  ||||||||||||||||||  | || | ||   ||    
T  10938167 tgaatcttagaagtacataacacactctccctttctggagttctacaaacgggtaaccctataatcgtctaccttaccaaggtgtgagaaaaatgatatt 10938266  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
      |  | | || ||| || ||||||||| | ||||||||||||||||||||||||||| || |||| |||  |||  | |||||||||||||||||||    
T  10938267 attgtgatgatataaatcatgaagtcacttgtttccttaattactaactagttacttcctgattctcgcaggtatggaccaatattaggtatgtcacc 10938364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 11218819 - 11218679
Alignment:
Q  195 acataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttattta 294  Q
    |||||||||||||||| | |  ||||||||||||||||| | ||||||||| || |||||||||||||||  |  ||| ||||||  || |||| |||||    
T  11218819 acataacacactctccttatcagtagttctacaaacgggaagccctatcagcgtataccttaccaaggtgcgaggagaatggagtaactgggctgattta 11218720  T
Q  295 agtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||| ||||||| | | ||||||||||||||||||||||||    
T  11218719 agtcatgaagtcgcttgtttccttaattactaactagttac 11218679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 378
Target Start/End: Original strand, 18495898 - 18496117
Alignment:
Q  155 aatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctacct 254  Q
    ||||||| |||||||   ||||||||||||||||||||  |||||| ||| |||||||||| |||||||| |||||||| | |||||||||  ||||  |    
T  18495898 aatgttcataaaggttccctcatctatgaatcttagaaatacataagacattctccctcttagtagttctgcaaacgggcagccctatcagcatctattt 18495997  T
Q  255 taccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcaccta-tttccttaattactaactagttacttcttggttctagcatat 353  Q
    |  |||||   ||  ||| |||||||  | |||||||||||||||||||||||  || ||| ||||||||||||||| ||||| |||| ||  |||| ||    
T  18495998 tgtcaagg---aaagagaatggagttattgggcttatttaagtcgtgaagtca--tagttttcttaattactaactacttactacttgatttaagcagat 18496092  T
Q  354 atacatcaatattaggtatgtcacc 378  Q
     | |||| |||||||||||||||||    
T  18496093 gttcatcgatattaggtatgtcacc 18496117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 335
Target Start/End: Complemental strand, 22338959 - 22338799
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||||||||||  || ||||| |||||||| ||||| ||||||||||||||| |||| |||||| || || |||||||||||||||  |  ||| |    
T  22338959 catctatgaatcttatgagtacatagcacactcttcctctcggtagttctacaaacaggtagccctattagcgtataccttaccaaggtgcgaggagaat 22338860  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||||| ||||| | || ||| || ||||||||| | |||| ||||||||||  |||||||    
T  22338859 ggagttactaggatgatataaatcatgaagtcacttgtttcattaattactatttagttac 22338799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 18662965 - 18663069
Alignment:
Q  157 tgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctacctta 256  Q
    ||||| ||||||| | | |||||||||||||||| || |  ||||||||||||||| | |||||||||||||||||  ||||||||||| ||||||||||    
T  18662965 tgttcctaaaggttttcccatctatgaatcttaggagta--taacacactctccctttcggtagttctacaaacggacaaccctatcagcgtctacctta 18663062  T
Q  257 ccaaggt 263  Q
    |||||||    
T  18663063 ccaaggt 18663069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 21884692 - 21884550
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    ||||||||||||| |||||  |||||||||||||  ||||||||||||||| |||||||||| || |||||||||||||| ||   |  ||| || ||||    
T  21884692 tgaatcttagaagaacatatgacactctccctctcagtagttctacaaacgtgtaaccctataagcgtctaccttaccaaagttcgaggagaatgaagtt 21884593  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaatta 323  Q
     || |||| | ||||||||||||||||| | ||||| ||||||    
T  21884592 actgggctgaattaagtcgtgaagtcacttgtttccctaatta 21884550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 140673 - 140828
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    ||||||||||||| |||||||| ||||||  |||| |||||| |||||| ||  ||||||||||  |||||||||||||| | |||   ||| |||||||    
T  140673 tgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatg-gaa--gagaatggagtt 140769  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttg 341  Q
     || || | ||||||||||||||||  | | |||||||||||||||||||||||| |||||    
T  140770 actgggttgatttaagtcgtgaagt--cgtgtttccttaattactaactagttacctcttg 140828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 9721586 - 9721707
Alignment:
Q  283 taggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacct 382  Q
    |||||| |||||||||||||||||  || ||| |||||||||||||||||||||||||| ||||  ||  ||| || |||| ||||||||||   |||||    
T  9721586 taggctgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgattctgccaggtatgcaccaatgttaggtatgt---cacct 9721682  T
Q  383 ccataagtacctttctctcagggtt 407  Q
     | ||||||||||||||||| ||||    
T  9721683 acttaagtacctttctctcaaggtt 9721707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 377
Target Start/End: Original strand, 1873430 - 1873586
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcaccta-tttc 315  Q
    ||||||||| |||| || | |||||||||||| |||||||||||||   ||  |||| ||||||  | |||| ||||||||||||||||||  || ||||    
T  1873430 gtagttctagaaacaggaagccctatcagtgtataccttaccaagg---aaagagagcggagttattgggctgatttaagtcgtgaagtca--tagtttc 1873524  T
Q  316 cttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcac 377  Q
    ||||||||||||||| ||||| |||| ||  | || || | |||||||||||||||||||||    
T  1873525 cttaattactaactacttactacttgatttcaacagatgttcatcaatattaggtatgtcac 1873586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 9917061 - 9917145
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttac 257  Q
    ||||||||||||| ||||||| | ||| |||||||||||||| |||| ||||||||| ||| | |||||||||  ||||||||||    
T  9917061 ctcatctatgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccctatcagcatctaccttac 9917145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 9924973 - 9925057
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttac 257  Q
    ||||||||||||| ||||||| | ||| |||||||||||||| |||| ||||||||| ||| | |||||||||  ||||||||||    
T  9924973 ctcatctatgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccctatcagcatctaccttac 9925057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 2348440 - 2348385
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  2348440 ctctcactcttagtagttctacaaacgggcaaccctatcagcgtctaccttaccaa 2348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 5222223 - 5222073
Alignment:
Q  185 tcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgcta 284  Q
    |||||| |||| |||  ||| |||||||||  |||||||||||||| ||||  |||| ||   |||| ||||||||||||  |  ||| || |||| ||     
T  5222223 tcttaggagcagatagtacagtctccctctcagtagttctacaaacaggtagacctaccaacatctatcttaccaaggtgcgaggagaatgaagttactt 5222124  T
Q  285 ggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||| ||||||| | ||||||||| | ||||||||||||||||||||||||    
T  5222123 ggctgatttaagacatgaagtcacttgtttccttaattactaactagttac 5222073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 10649963 - 10650029
Alignment:
Q  312 tttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    ||||||||||||||||||||||||| |||| ||  ||||||| | |||||||||| |||||||||||    
T  10649963 tttccttaattactaactagttactacttgatttcagcatatgttcatcaatatttggtatgtcacc 10650029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 21227870 - 21227959
Alignment:
Q  173 ctcatctatgaatcttagaagcacataa-cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||| ||||||||||| |||| | || ||||| ||||||||||||||||||||| || |||||||||  |||||| ||||||||||    
T  21227870 ctcatctattaatcttagaagtacatcagcatactcttcctcttggtagttctacaaacaggcaaccctatc-ttgtctatcttaccaagg 21227959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 4901463 - 4901383
Alignment:
Q  181 tgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||| |||| |||| ||||||||||| |||||||||||||| ||| | |||||||   |||||||||||||||    
T  4901463 tgaatcttagaaggacatcaacaaactctccctctcggtagttctacaaatgggcatccctatc-tcgtctaccttaccaag 4901383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 5102136 - 5102024
Alignment:
Q  183 aatcttagaagcacataa-cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttg 281  Q
    ||||||||||| |||| | ||||||||||||||  ||||||||||||||| | |||||||||    ||||||||||| |||||||| |||| || ||||     
T  5102136 aatcttagaaggacatcagcacactctccctctcagtagttctacaaacgagcaaccctatc-tcatctaccttaccgaggtgaaagaagaatgaagtta 5102038  T
Q  282 ctaggcttatttaa 295  Q
    ||| ||| ||||||    
T  5102037 ctaagctaatttaa 5102024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 5107219 - 5107280
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||| |||||| | ||||| |||||| ||| ||||||||||| ||||||||||||||||    
T  5107219 cacactccccctctcgatagttttacaaaagggcaaccctatcagcgtctaccttaccaagg 5107280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 9890737 - 9890770
Alignment:
Q  82 ggtcttactctcttagaggtaattgaaacataaa 115  Q
    ||||||||||||||||||||||||||||||||||    
T  9890737 ggtcttactctcttagaggtaattgaaacataaa 9890770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 19398525 - 19398464
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||| |||||| |||| ||||||||||||| |||||| ||||  ||||||||||    
T  19398525 gtgtggggtctttctctctaagagctaattgaaacatagacttaaattagagttcctaaatt 19398464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 20175132 - 20175240
Alignment:
Q  181 tgaatcttagaagcacata-acacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg-tgaaacaagagtggag 278  Q
    ||||||||||||| ||||  ||||||| ||||||| |||||||||||||||||  ||||| |||   |||||||||||||||| ||||| |||| || ||    
T  20175132 tgaatcttagaaggacattcacacactttccctctcggtagttctacaaacggacaaccccatc-tcgtctaccttaccaaggatgaaagaagaatgaag 20175230  T
Q  279 ttgctaggct 288  Q
    || |||||||    
T  20175231 ttactaggct 20175240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 323
Target Start/End: Complemental strand, 21912017 - 21911871
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctctt----ggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgg 276  Q
    ||||||||||||| ||||| ||||||||| ||||     || |||| |||||||||| | ||||| ||| |||||||| ||||||||  ||| ||| ||     
T  21912017 tgaatcttagaagaacatagcacactctctctctctctcgggagttttacaaacgggcagccctaacagcgtctacctaaccaaggttcaacgagaatga 21911918  T
Q  277 agttgctaggcttatttaagtcgtgaagtcacctatttccttaatta 323  Q
    |||| || || | ||||||||||| ||||||| | ||||| ||||||    
T  21911917 agttactgggatgatttaagtcgtaaagtcacttgtttccctaatta 21911871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 7318915 - 7318963
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||||||| | || |||||||||||||| |||||||    
T  7318915 cttggtagttctacaaacgggaagccttatcagtgtctaccataccaag 7318963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 18202710 - 18202666
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||    
T  18202710 gtagttctacaaacgggaagccctatcagcgtctaccttaccaag 18202666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 23588052 - 23588112
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaat 136  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||| ||||  |||||||||    
T  23588052 gtgtgggatcttactctctcagaggtaattgaagtataaacttaaattagagttcctaaat 23588112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 10480428 - 10480369
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||| ||||||||||||||||||||||||||| |  |||||| ||||  ||||||||||    
T  10480428 gtgggatcttactctcttagaggtaattgaaacgtggacttaaattagggttcctaaatt 10480369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 21501712 - 21501774
Alignment:
Q  74 acgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||||||||| || || |||||||||||||||||||||| ||  | ||||||||||    
T  21501712 acgtgtggggtcttactccctcag-ggtaattgaaacataaacttaaattgacgttcctaaatt 21501774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 8157868 - 8157915
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttag 125  Q
    ||||||||||||||||||  |||||||||||||||||| |||||| ||||    
T  8157868 gtgtggggtcttactctc--agaggtaattgaaacatagacttaaattag 8157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 1728013 - 1728074
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| || ||||  ||||||||||    
T  1728013 gtgtggggtcttgctctcttagaagtaattgaagcatatactaaaattagagttcctaaatt 1728074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 6006553 - 6006639
Alignment:
Q  175 catctatgaatcttaga-agcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||||| | | |||| |||||||| ||||  ||||| |||||||||||| | | ||||||  ||||||||||||||||    
T  6006553 catctatgaatcttagatatctcatagcacactcttcctc--ggtagatctacaaacgggcagctctatcaacgtctaccttaccaagg 6006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 10941989 - 10941944
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||||    
T  10941989 gtagttctacaaacgggaaactctatcagcctctaccttaccaagg 10941944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 12329935 - 12329996
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttac 257  Q
    |||| |||||||||||||| | |||||||||||  ||| | ||||||||| |||||||||||    
T  12329935 catagcacactctccctctcgatagttctacaactgggcagccctatcagcgtctaccttac 12329996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 9863847 - 9863783
Alignment:
Q  200 acacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtg 264  Q
    |||| ||||| ||||  ||||||||||||| ||| | ||||||||| ||||||||||| ||||||    
T  9863847 acactctctctctctcagtagttctacaaatggggagccctatcagcgtctaccttactaaggtg 9863783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 9917340 - 9917368
Alignment:
Q  350 atatatacatcaatattaggtatgtcacc 378  Q
    |||||||||||||||||||||||||||||    
T  9917340 atatatacatcaatattaggtatgtcacc 9917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 9925252 - 9925280
Alignment:
Q  350 atatatacatcaatattaggtatgtcacc 378  Q
    |||||||||||||||||||||||||||||    
T  9925252 atatatacatcaatattaggtatgtcacc 9925280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 21884935 - 21884872
Alignment:
Q  38 cagctttcgagttgcacgtgctgatcacacag--acgtacgtgtggggtcttactctcttagag 99  Q
    ||||| || |||||||| ||||||||||||||  | ||||| ||||||||||||||||| ||||    
T  21884935 cagctgtctagttgcacctgctgatcacacaggtatgtacgcgtggggtcttactctctcagag 21884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 27 - 378
Target Start/End: Complemental strand, 27854232 - 27853883
Alignment:
Q  27 tcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagc 126  Q
    |||||||||||||||| ||||||| ||| | |||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||  |    
T  27854232 tcattcccctccagctatcgagttccacctactgatcacacggatgtacgtgtggggttttactctctcagaggtaattgaaacataaacttaaattgac 27854133  T
Q  127 tttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctac 226  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||| || |||  ||||||||||||||||||||||||||||||| ||| | |||||||||    
T  27854132 tttcctaaattttgatcagtgtagtctcaatgttcttaaaggtc-gcccattcatgaatcttagaagcacataacacactctcc-tctcgatagttctac 27854035  T
Q  227 aaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattacta 326  Q
    ||||| | | |||||| || |||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||| |||| |||||| ||||||||    
T  27854034 aaacgagaagccctattagcgtctaccttatcaaggtgaaagatgagtggagttactaggctgatttaagtcgtgaagtaacctgtttcctaaattacta 27853935  T
Q  327 actagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    |||||||||||| || |||| | | |||||||||||||||||||||| ||||    
T  27853934 actagttacttcgtgattctggaagatatacatcaatattaggtatgccacc 27853883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 27 - 378
Target Start/End: Original strand, 20885584 - 20885918
Alignment:
Q  27 tcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagc 126  Q
    |||||||||||||||| ||||||||||| || |||| || |  | ||| ||||||||||| |||||||||||||||||| ||||||| |||||| || ||    
T  20885584 tcattcccctccagctgtcgagttgcacatgttgataacgcgtatgtatgtgtggggtctcactctcttagaggtaatttaaacatagacttaaattggc 20885683  T
Q  127 tttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctac 226  Q
    ||||||||||| | || ||| || ||||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||| |||    
T  20885684 tttcctaaattcccatcagtctaatcccaatcttcttaaaggtccgctcatctatgaatcttagaagcacatagcacattctccctcttgatagttatac 20885783  T
Q  227 aaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattacta 326  Q
    ||||||                |||||||||| |||||||| |||||||||||| || |||| |||| |||||||||||||| | |||||||||||| |     
T  20885784 aaacgg----------------ctaccttaccgaggtgaaaaaagagtggagttactgggctgatttcagtcgtgaagtcacttgtttccttaatta-tt 20885866  T
Q  327 actagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    |||||||||||| |  |||  | | |||| ||||||||||||||||||||||    
T  20885867 actagttacttcctttttcaggaaaatatgcatcaatattaggtatgtcacc 20885918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 7148375 - 7148565
Alignment:
Q  24 ggctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagtt 123  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||| ||||||||| || ||||||||| | | |||||||||||||| |||||||||||||    
T  7148375 ggctcattcccctccagctttcgagttacacctattgatcacacggacgtacgtttgaggtcttactatatcagaggtaattgaaatataaacttaagtt 7148474  T
Q  124 agctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctct 214  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||| |||||    
T  7148475 agctttcctgaatttcgatcagtgtagtcccaatgttcttaaaggtccactcatttatgaatcttagaagcacatatcacactcttcctct 7148565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 326
Target Start/End: Complemental strand, 821167 - 820920
Alignment:
Q  80 ggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagt--gtagtcccaatgttcttaaaggtctgctcat 177  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||||  ||| |||||| | | | ||  |   ||||||||||| ||||||| | |||||    
T  821167 ggggtcttactcgcttaggagtaattgaaacataaacttaaattagagttcgtaaatttccaaaggtacgacttcccaatgttcctaaaggt-tcctcat 821069  T
Q  178 ctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgga 277  Q
     ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | | ||||||| ||||||||||| || ||| || |||| ||||    
T  821068 atatgaatcttagaagtacatagcacactctccctctcggtagttctacaaacgggaagctctatcagcgtctaccttacgaatgtgcaagaagaatgga 820969  T
Q  278 gttgctaggcttatttaagtcgtgaagtcacctatttccttaattacta 326  Q
    ||| || |||| |||||||| |||||||||| | |||||||||||||||    
T  820968 gttactgggctgatttaagttgtgaagtcacttgtttccttaattacta 820920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 344
Target Start/End: Original strand, 22245860 - 22246014
Alignment:
Q  190 gaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggctt 289  Q
    |||| ||||| |||||| | |||||  ||||||||||||||||||| |||||||||||||||||| |||||||||| |  ||| ||||||| ||  |||     
T  22245860 gaagtacatagcacacttttcctctcagtagttctacaaacgggtagccctatcagtgtctacctcaccaaggtgagaggagaatggagttactgagctg 22245959  T
Q  290 atttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggtt 344  Q
    ||||||||||||||||||  | |||||||||||||||| ||||||| || |||||    
T  22245960 atttaagtcgtgaagtcaattgtttccttaattactaattagttacatcctggtt 22246014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 336
Target Start/End: Original strand, 21018397 - 21018552
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||||||| |||||||||||||||||||| |||  || |||||||||||||| ||||||||| |||||||||||||    |||||   |||    
T  21018397 ctcatctatgaatcttacaagcacataacacactctccttctaagtggttctacaaacgggcaaccctatccgtgtctaccttac----gtgaa--gaga 21018490  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
     |||||||  | || | ||||||||||||||||||  | |||||||||||||||||||||||||    
T  21018491 atggagttattgggttgatttaagtcgtgaagtca--tttttccttaattactaactagttact 21018552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 378
Target Start/End: Original strand, 6290363 - 6290568
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    |||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||| |  | | ||||||| ||||||||||||||||||  |  |||    
T  6290363 ctcatctatgaatcttagaagtgcataacatactctccttcttggtagttctacaaacagacatctctatcagcgtctaccttaccaaggtgcgagtaga 6290462  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
     || ||||  |  ||| ||||||||| ||||||||| |  ||||||||||||| |||| ||||| | || ||  |||  || | ||||||||||||||||    
T  6290463 atgaagttattgtgctgatttaagtcatgaagtcacttggttccttaattacttactaattactacctgatttcagctgatgttcatcaatattaggtat 6290562  T
Q  373 gtcacc 378  Q
    ||||||    
T  6290563 gtcacc 6290568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 13907788 - 13907616
Alignment:
Q  206 tctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagt 305  Q
    ||||| |||||||||||||||||| ||| | |||||||||  |||  ||||||||||||  |  ||| ||||||| ||||| | ||||||||||||||||    
T  13907788 tctccatcttggtagttctacaaatgggaagccctatcagcatcttacttaccaaggtgcgaagagaatggagttactaggttgatttaagtcgtgaagt 13907689  T
Q  306 cacctatttccttaattactaactagttact-tcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    ||| | ||||||||||||||||||||||||| || |  ||| |||| || | ||||||||||||||||||||||    
T  13907688 cacttgtttccttaattactaactagttactatcatatttc-agcagattttcatcaatattaggtatgtcacc 13907616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 28729199 - 28729340
Alignment:
Q  82 ggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctat 181  Q
    ||||||||||||| |||||||||||||||||| |||| | ||||| |||||||||| | || ||||| ||| |||| |||||||||||   || || ||     
T  28729199 ggtcttactctctcagaggtaattgaaacatagacttgaattagcgttcctaaattcccatcagtgtggtctcaatcttcttaaaggttcacttatatac 28729298  T
Q  182 gaatcttagaagcacataacacactctccctcttggtagttc 223  Q
     |||||||||||   |||||||||||||||||| | ||||||    
T  28729299 aaatcttagaagtgtataacacactctccctctcgatagttc 28729340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 314609 - 314767
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||||||||||||||| ||| ||||| |||  | ||||||| |||| |||||||||| |  |  |||||||   |||||||||| ||||||  | |||| |    
T  314609 catctatgaatcttacaagtacatagcacgttgtccctctcggtaattctacaaacagacagtcctatcaacatctaccttacgaaggtgcgagaagaat 314708  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagtt 333  Q
    |||||| || | || ||||||||| ||||||||| | ||||||||||||||||||||||    
T  314709 ggagttactggactaatttaagtcatgaagtcacttgtttccttaattactaactagtt 314767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 3115938 - 3115877
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||    
T  3115938 cacactctccctctcggtagttctacaaacgggcagccttatcagtgtctaccttaccaagg 3115877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 8446370 - 8446458
Alignment:
Q  175 catctatgaatcttagaagca-cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||| |||  |||| |||||||||||| | ||||||| |||||||||  ||||||||||||||||||||| ||||||    
T  8446370 catctatgaatcttaggagcttcatagcacactctccctatcggtagttatacaaacggacaaccctatcagtgtctacctttccaagg 8446458  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 20398066 - 20398127
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||||||| || |||||||||||||||||| |||||| ||||  ||||||||||    
T  20398066 gtgtggggtcttactcgctcagaggtaattgaaacatatacttaaattagagttcctaaatt 20398127  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 25757168 - 25757229
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||| ||||||||||||| |||||||||||||||||| |||||| ||||| ||| ||||||    
T  25757168 gtgtgaggtcttactctctcagaggtaattgaaacatagacttaaattagcattcttaaatt 25757229  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 8446266 - 8446330
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||||||||||||||| || | |||||||||||||||| |||||| || || ||||||||||    
T  8446266 tacgtgtggggtcttactccctcaaaggtaattgaaacatagacttaaattggcattcctaaatt 8446330  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 8144059 - 8144123
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||| ||||||||||||| | |||||||||||||||| |||||| || |  ||||||||||    
T  8144059 tacgtgtgaggtcttactctctcaaaggtaattgaaacatagacttaaattggaattcctaaatt 8144123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 21083703 - 21083755
Alignment:
Q  85 cttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||| ||||||||||||| ||||||||||| ||||  ||||||||||    
T  21083703 cttactctctcagaggtaattgaagcataaacttaaattagagttcctaaatt 21083755  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 16221938 - 16221997
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    |||||| ||| ||| |||||||||||||||| | | |||||||||||||||| |||||||    
T  16221938 cacactttccatctcggtagttctacaaacgagcagccctatcagtgtctactttaccaa 16221997  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 41509043 - 41509098
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    ||||| ||||| ||||||||||||||||| |||  |||||| ||||||||||||||    
T  41509043 ctctcgctcttagtagttctacaaacgggcaactgtatcagcgtctaccttaccaa 41509098  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 18736199 - 18736133
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||| |||||||| |||||   |||||| ||||||||| | ||||| ||||||||||||||||||||    
T  18736199 catagcacactcttcctctcaatagttccacaaacgggcagccctaccagtgtctaccttaccaagg 18736133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 21325925 - 21325983
Alignment:
Q  203 cactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||| ||||| ||||||| ||||||||| | |||| |||| |||||||||||||||    
T  21325925 cactctcactcttagtagttcaacaaacgggaagccctgtcagcgtctaccttaccaag 21325983  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 21825356 - 21825290
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||| ||||||||||| || |||||||||||||| | | ||| |||||||  |||||||||||||||    
T  21825356 catagcacactctcccactcggtagttctacaaatgagcaactctatcagcatctaccttaccaagg 21825290  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 8144193 - 8144234
Alignment:
Q  204 actctccctcttggtagttctacaaacgggtaaccctatcag 245  Q
    ||||||||||| |||||||||||||||||| | |||||||||    
T  8144193 actctccctctcggtagttctacaaacgggcagccctatcag 8144234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 12772425 - 12772385
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttac 257  Q
    ||||||||||||||||| | ||||||||| |||||||||||    
T  12772425 gtagttctacaaacgggcatccctatcagcgtctaccttac 12772385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 17156384 - 17156432
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    |||||||||||||||||  || ||||||||||  |||||||||||||||    
T  17156384 cttggtagttctacaaattggcaaccctatcaacgtctaccttaccaag 17156432  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 22245750 - 22245814
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||||||||||  |||| |||||||||||| || | |||| || || ||||||||||    
T  22245750 tacgtgtggggtcttactccgttaggggtaattgaaacttagatttaaattggcgttcctaaatt 22245814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 25781343 - 25781307
Alignment:
Q  79 tggggtcttactctcttagaggtaattgaaacataaa 115  Q
    |||||||||||||||| |||| |||||||||||||||    
T  25781343 tggggtcttactctctcagagttaattgaaacataaa 25781307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 49 - 408
Target Start/End: Original strand, 26907 - 27269
Alignment:
Q  49 ttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgt 148  Q
    |||||| |||||||||||  ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||    
T  26907 ttgcacatgctgatcacatggacgtacgtgtggggccttactctcttagaggtaattaaaacataaacttaagttagctttcataaattccgattagtgt 27006  T
Q  149 agtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagt-- 246  Q
    | |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||| | |||||| ||||| ||||||||||      
T  27007 aatcccaatgttcttaaaggtccgctcatctaggaatcttagaagcccataacacactctccctctcggtagctttacaaaagggtagccctatcagtat 27106  T
Q  247 ----gtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttgg 342  Q
         |||||||||||||||||||| ||||||||||||  | | |  |||||| |||  ||||||||  ||||||||||||||||||||||| ||| ||     
T  27107 caacatctaccttaccaaggtgaaagaagagtggagttattggacagatttaaatcgcaaagtcacccgtttccttaattactaactagttatttcctga 27206  T
Q  343 ttctagcatatatacatcaatattaggtatgtcaccacctccataagtacctttctctcagggttc 408  Q
    || | |||||||| | ||||||||||||||||   ||||||| ||||||||||||| |||||||||    
T  27207 ttttggcatatatgcgtcaatattaggtatgt---cacctccctaagtacctttctatcagggttc 27269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 336
Target Start/End: Complemental strand, 184011 - 183875
Alignment:
Q  200 acacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcg 299  Q
    ||||||||||||||| |||||||||| |||| || | ||||||||  ||||  ||||| ||||||  |  | | ||||||| || |||| |||||||||     
T  184011 acacactctccctctcggtagttctataaacaggcagccctatcaacgtctttcttactaaggtgtgaggaaaatggagttactgggctgatttaagtca 183912  T
Q  300 tgaagtcacctatttccttaattactaactagttact 336  Q
    ||||||||| | ||||||||||||| |||||||||||    
T  183911 tgaagtcacttgtttccttaattaccaactagttact 183875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 378
Target Start/End: Complemental strand, 15065057 - 15064712
Alignment:
Q  33 ccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaa-cttaagttagctttcc 131  Q
    |||||||||| ||||||||||| |||| ||||  | |||  |||||||  ||||||||| || ||| ||| |||||||||||| |||| ||| |||||||    
T  15065057 ccctccagctatcgagttgcacatgctaatcatgcggactgacgtgtgaagtcttactccctcagatgtatttgaaacataaaacttatgttggctttcc 15064958  T
Q  132 taaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacg 231  Q
    |||| | |||| |||||  ||| ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |||||||||||||||     
T  15064957 taaaatccgatcagtgttatcctaatgttcttaaaggtctgcccatctatgaatcatagaagcacatagcacactctccctctcggtagttctacaaaca 15064858  T
Q  232 ggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactag 331  Q
    || | || |||||| ||||||||||||| ||||||| |||||||||| ||||||||| || |||||||||||||| ||| ||| | | ||||||||||||    
T  15064857 ggcagccttatcagcgtctaccttaccatggtgaaagaagagtggagatgctaggctgatctaagtcgtgaagtcgcctgttttc-tcattactaactag 15064759  T
Q  332 ttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||    
T  15064758 ttacttcttgatttttgcagatatacatcaatattaggtatgtcacc 15064712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 81 - 378
Target Start/End: Original strand, 5855545 - 5855842
Alignment:
Q  81 gggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatcta 180  Q
    |||| ||||||||| |||||||||||||||| ||| |||| || ||||||||||||| | || ||||||||||| || ||| |||||||| |  ||| ||    
T  5855545 gggttttactctctcagaggtaattgaaacagaaatttaaattggctttcctaaatttccatcagtgtagtcccgatcttcataaaggtccgaccattta 5855644  T
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||| || ||| ||| |||||||| |||||||| || || ||||||    
T  5855645 tgaatcttagaagcacataacacactctccctctcagtagttctacaaacgggcaaccttaccagcgtccaccttaccgaggtgaaagaaaagcggagtt 5855744  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
     || |||| ||||||||||  ||||||| | |||||||||||||||| |||||| ||| || || ||  | ||||| |||||||||||||||||||||    
T  5855745 actgggctaatttaagtcgcaaagtcacttgtttccttaattactaaatagttaattcctgattttaatagatataaatcaatattaggtatgtcacc 5855842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 330
Target Start/End: Original strand, 17977156 - 17977310
Alignment:
Q  176 atctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtg 275  Q
    |||||||||||||||||| ||||| |||||| ||||||| ||||||| |||||||||| | ||||||||| |||| ||||||||||||| ||  ||| ||    
T  17977156 atctatgaatcttagaagtacatagcacactatccctctcggtagttttacaaacgggaagccctatcagcgtctgccttaccaaggtgcaaggagaatg 17977255  T
Q  276 gagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaacta 330  Q
    ||||| ||||||| ||||||||||||||||||| | ||| | |||||| ||||||    
T  17977256 gagttactaggctgatttaagtcgtgaagtcacttgttttcataattaataacta 17977310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 378
Target Start/End: Complemental strand, 5052468 - 5052275
Alignment:
Q  185 tcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgcta 284  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||| || |||||||||||  |||||||||||||||||  |  ||| ||||| | ||     
T  5052468 tcttagaagtacataacacactctcccactctgtagttctacaaacaggcaaccctatcagcatctaccttaccaaggtgcgaggagaatggagctactg 5052369  T
Q  285 ggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    || | ||||||||| ||||||||| | ||||||||||||| ||||||||||| | |  || ||| | || | ||||||||||||||||||||||    
T  5052368 ggttaatttaagtcatgaagtcacttgtttccttaattaccaactagttactacctaattttagtagatgttcatcaatattaggtatgtcacc 5052275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 76 - 336
Target Start/End: Original strand, 24905076 - 24905337
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtc-ccaatgttcttaaaggtctgct 174  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||| ||||  |||||||||| | | | || |  |  ||| ||||  | |||||   ||    
T  24905076 gtgtagggtcttactcccttaggggtaattgaaacataaacttaaattagaattcctaaatttctaaaggtatgatgaccattgttactcaaggttctct 24905175  T
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||| ||||||||| ||||| |||||  |||||||  |||| ||||||||||||||| || | ||||||||||||||||||||||||||||  |  ||| |    
T  24905176 catatatgaatctaagaagtacatagaacactctatctctcggtagttctacaaacaggcagccctatcagtgtctaccttaccaaggtgcgaggagaat 24905275  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
    ||| ||  | || | |||||||| |||||||||| | |||||| ||||||||||||||||||    
T  24905276 ggacttattgggttgatttaagtggtgaagtcacttgtttcctcaattactaactagttact 24905337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 17965531 - 17965647
Alignment:
Q  151 tcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtct 250  Q
    ||||||||||| |||||||   || |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |  | ||||||||| ||||    
T  17965531 tcccaatgttcctaaaggtacccttatctatgaatcttagaagtacataacacactctccctcttagtaattctacaaacagacagccctatcagcgtct 17965630  T
Q  251 accttaccaaggtgaaa 267  Q
    |||||||||||||||||    
T  17965631 accttaccaaggtgaaa 17965647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 30121806 - 30121655
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtc-ccaatgttcttaaaggtct 171  Q
    ||||||| |||||||||||||| |  |||| |||||||||| |||||| || || ||||||||||   | | || |  |  ||||||||||||||||| |    
T  30121806 tacgtgtagggtcttactctctcaatggtagttgaaacatagacttaaattggcgttcctaaattttcaaaggtatgatgaccaatgttcttaaaggttt 30121707  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttc 223  Q
     | ||||||||||| |||| || |||||||||||||||||||| ||||||||    
T  30121706 tcccatctatgaattttaggagtacataacacactctccctctcggtagttc 30121655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 14075948 - 14076123
Alignment:
Q  85 cttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaa 184  Q
    |||||| ||| | |||| ||| |||||||||||||| ||||  |||||||||| | |  ||||| |||| | | |||| ||||||   ||||| || | |    
T  14075948 cttactttctcaaaggttattaaaacataaacttaaattagagttcctaaattcccactagtgttgtcctagtcttctaaaaggttctctcatatacgga 14076047  T
Q  185 tcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||| ||||||||||||||||||||||||  | |||||| | ||| ||| |||||||  || ||||||||||||||||    
T  14076048 tcttcgaagcacataacacactctccctc--gatagttcgataaatgggaaaccctactagcgtctaccttaccaagg 14076123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 24119267 - 24119204
Alignment:
Q  181 tgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatc 243  Q
    ||||||||||||| |||| ||||||||||||||||   |||||||||||||||| |||||||||    
T  24119267 tgaatcttagaaggacatcaacacactctccctctctatagttctacaaacgggcaaccctatc 24119204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 26394225 - 26394166
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttac 257  Q
    |||||||||||||  |||  |||||||||||||||||  |||||||||||||||||||||||    
T  26394225 cataacacactctatctc--ggtagttctacaaacggacaaccctatcagtgtctaccttac 26394166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 12657376 - 12657339
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  12657376 gtgggctcttactctcttagaggtaattgaaacataaa 12657339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 26614909 - 26614850
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||||||||||||||| | ||||||||| |||| |||||| ||||  ||||||||||    
T  26614909 gtggggtcttactctcttaaaagtaattgaagcatatacttaaattagagttcctaaatt 26614850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 24645418 - 24645476
Alignment:
Q  202 acactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    ||||||||||||| | |||||||||||||||  | ||||||||  ||||||||||||||    
T  24645418 acactctccctctcgttagttctacaaacggacacccctatcaacgtctaccttaccaa 24645476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 30486870 - 30486952
Alignment:
Q  290 atttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
    ||||||||| ||||||||| | ||| |||||||||||| |||||||| | || ||  |||| ||||  |||||||||||||||    
T  30486870 atttaagtcatgaagtcacgtgttttcttaattactaattagttactacctgatttcagcagatatgaatcaatattaggtat 30486952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 6885538 - 6885599
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||| |||  ||||||||||||||||| | || ||| || ||||||||||||||||    
T  6885538 cacactctccttctcagtagttctacaaacgggcagccttattagcgtctaccttaccaagg 6885599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 21315222 - 21315267
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||||| ||| ||||||| |||||||||| |||||    
T  21315222 gtagttctacaaacgggcaacactatcagcgtctaccttatcaagg 21315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 25181956 - 25181915
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttacc 258  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  25181956 gtagttctacaaacgggcaaccctatcagcgtctacattacc 25181915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 31 - 416
Target Start/End: Original strand, 23265529 - 23265912
Alignment:
Q  31 tcccctccagctttcgagttgcacgtgctgatcacacagacgtacgt----gtggggtcttactctcttagaggtaattgaaacataaacttaagttagc 126  Q
    |||||||||||| ||||||||||| |||| ||||||| |  ||| ||    ||||||||||| |||||||| ||||||||||||||  | |||| |||||    
T  23265529 tcccctccagctgtcgagttgcacctgctaatcacacgg--gtaggtttacgtggggtcttattctcttagtggtaattgaaacatggatttaaattagc 23265626  T
Q  127 tttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctac 226  Q
     |||||||||| | || ||||||||   ||| |||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  23265627 gttcctaaattcctattagtgtagttaaaatcttcttaaaggtacgctcatctacgaatcttagaagcacataacacactctccatctcggtagttctac 23265726  T
Q  227 aaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattacta 326  Q
    ||||| | ||||||||||   ||||||||||||||||||||  ||| || ||||  | |||| ||||||||||||||||||| | |||||||||||| ||    
T  23265727 aaacgagcaaccctatcaacatctaccttaccaaggtgaaaggagaatgaagttattgggctgatttaagtcgtgaagtcacatgtttccttaattagta 23265826  T
Q  327 actagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacctccataagtacctttctctcagggttcttctctct 416  Q
    ||||| |||||| || |||   || |||| |||||||| ||||||| |   ||||||| ||||||||||||||| | |||||| ||||||    
T  23265827 actagctacttcctgattcagtcagatatgcatcaata-taggtattt---cacctccctaagtacctttctcttaaggttctactctct 23265912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 26252263 - 26252446
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaactt-aagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctca 176  Q
    ||||||||||||||||| |||||||||| |||||||||||| || ||||| |||||||||||| || ||||| ||||||||| || ||| |||   ||||    
T  26252263 gtggggtcttactctctcagaggtaattcaaacataaacttgaatttagcgttcctaaattaccatgagtgtggtcccaatgctcctaatggttcactca 26252362  T
Q  177 tctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    || |||||||||||||| ||||| |||||||||||||| ||||||||| |||||||| | |||||||||  |||||||||||||    
T  26252363 tcaatgaatcttagaagtacatagcacactctccctctcggtagttctgcaaacgggcagccctatcagcatctaccttaccaa 26252446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 336
Target Start/End: Complemental strand, 19762843 - 19762660
Alignment:
Q  153 ccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctac 252  Q
    ||||||||| |||||||    |||| ||||||||||||||| ||||  |||||||||||||| ||||||||| |||||||  | ||||||||| ||||||    
T  19762843 ccaatgttcctaaaggttccttcatttatgaatcttagaagtacattgcacactctccctctcggtagttctccaaacggacagccctatcagcgtctac 19762744  T
Q  253 cttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
    |||||||||||| || |||| |||||||  | |||| ||||||| ||||||||||| | |||||||||||||||||||||||||    
T  19762743 cttaccaaggtgcaagaagaatggagttattgggctgatttaagacgtgaagtcacttgtttccttaattactaactagttact 19762660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 73 - 335
Target Start/End: Complemental strand, 17171207 - 17170943
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcc-caatgttcttaaagg-tc 170  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||| | | |  |||||||||| | | |||| |  |   || ||||| |||||| |     
T  17171207 tacgtgtggggtcttactcccttaaaggtaactgaaacataaacttatggtggagttcctaaatttccaaaagtatgatggtcagtgttcctaaagggtt 17171108  T
Q  171 tgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaa 270  Q
    | | |||||||||||||||| || |||||||||||||||||||||| ||||||||||||| || | ||||||||| |||||||||||||||||   |  |    
T  17171107 ttcccatctatgaatcttagcagtacataacacactctccctcttgatagttctacaaacaggcagccctatcagcgtctaccttaccaaggtttgagga 17171008  T
Q  271 gagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    || |||| || || | || ||||||||| ||||||| |||||||||||||||| |||||||||||    
T  17171007 gaatggaattactggcctgatttaagtcatgaagtcgcctatttccttaattaataactagttac 17170943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 335
Target Start/End: Complemental strand, 17470899 - 17470662
Alignment:
Q  99 ggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtc-ccaatgttcttaaaggtctgctcatctatgaatcttagaagcaca 197  Q
    ||||||||||||||||||||||||| || ||| |||||| | | | || | ||  ||||||||| ||||||| | | |||||||||||||||| || |||    
T  17470899 ggtaattgaaacataaacttaagttggcattcttaaatttccaaaggtatggtggccaatgttcctaaaggttttcccatctatgaatcttaggagtaca 17470800  T
Q  198 taacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagt 297  Q
    ||||| |||||||||||  ||||||||||||||||| | ||||||||||||||||||||||||||||  |  ||| || ||||  | | || |||||||     
T  17470799 taacaaactctccctctcagtagttctacaaacgggaatccctatcagtgtctaccttaccaaggtgcgaggagaatgaagttattggactaatttaaga 17470700  T
Q  298 cgtgaagtcacctatttccttaattactaactagttac 335  Q
    | ||||||||| | |||||||||||| ||| |||||||    
T  17470699 catgaagtcacttgtttccttaattaataattagttac 17470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 154 - 335
Target Start/End: Original strand, 9521318 - 9521499
Alignment:
Q  154 caatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctacc 253  Q
    ||||||| |||||||| | |||| |||| | ||||||||| ||||| |||||||||||||| |||||||||||||||||  ||||||||||  ||||||     
T  9521318 caatgttgttaaaggtttcctcaactattagtcttagaagtacatagcacactctccctctcggtagttctacaaacggacaaccctatcatcgtctact 9521417  T
Q  254 ttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||| |||||||||  ||| |||||||  ||  || ||||||||||| ||||||  | ||||||||||||||||||||||||    
T  9521418 ttacgaaggtgaaaggagaatggagttattatactgatttaagtcgtaaagtcaattgtttccttaattactaactagttac 9521499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 378
Target Start/End: Original strand, 26066704 - 26066879
Alignment:
Q  203 cactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtga 302  Q
    |||||||||||| |||||||||||||||||| | ||||||||| ||||| ||||||||||||  |  ||| ||||||| |||  || |||||||||||||    
T  26066704 cactctccctctcggtagttctacaaacgggcagccctatcagcgtctaacttaccaaggtgcgaggagaatggagttactacactgatttaagtcgtga 26066803  T
Q  303 agtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    ||| || | ||||||||| |||||| |||||||| | || ||  ||||||| | |||||||||||| |||||||||    
T  26066804 agtaacttgtttccttaagtactaattagttactacctgatttcagcatattttcatcaatattagttatgtcacc 26066879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 73 - 335
Target Start/End: Original strand, 22871113 - 22871375
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaa-tgttcttaaaggtct 171  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||| || |||||||||| | | | ||   ||  | | ||||| ||| ||| |    
T  22871113 tacgtgtggggtcttactccctcaggggtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtaaggtggcgagtgttcctaagggttt 22871212  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaag 271  Q
       | |||||||||||||| || | ||| |||||| || |||| ||||||| |||||||||| ||||||||| | |||||||||||||||||||    ||    
T  22871213 taccttctatgaatcttaggagtagatagcacactatctctctcggtagttttacaaacgggcaaccctatccgcgtctaccttaccaaggtgaggggag 22871312  T
Q  272 agtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||||| ||| | | | || ||||||||||||||||  | ||||||| ||||||||||||||||    
T  22871313 agtggatttgttggacatagttaagtcgtgaagtcaattgtttcctt-attactaactagttac 22871375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 24164573 - 24164433
Alignment:
Q  195 acataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttattta 294  Q
    ||||| ||||||||||||||| ||| ||||||||| ||| | ||||||||| |||||||||||||||||   |  ||| |||| || || |||| |||||    
T  24164573 acatagcacactctccctcttagtacttctacaaatgggcagccctatcagcgtctaccttaccaaggttcgaagagaatggaattactgggctgattta 24164474  T
Q  295 agtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    |||| ||||||||| | |||||||||||| |||||||||||    
T  24164473 agtcatgaagtcacttgtttccttaattaataactagttac 24164433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 378
Target Start/End: Original strand, 26314273 - 26314428
Alignment:
Q  223 ctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaatt 322  Q
    ||||||||||| | ||||||||| ||||||||||| ||||||  |  ||| |||||||||||| || |||||||| |||||||||| | |||||||||||    
T  26314273 ctacaaacgggcagccctatcagcgtctaccttactaaggtgcgaggagaatggagttgctagactgatttaagttgtgaagtcacttgtttccttaatt 26314372  T
Q  323 actaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    |||||||| ||||| |  | ||  |||| || | |||||||||||| |||||||||    
T  26314373 actaactacttactaccagatttcagcagatctgcatcaatattagttatgtcacc 26314428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 35985165 - 35985005
Alignment:
Q  44 tcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgata 143  Q
    ||||||||||| |||||||||| |  ||||||| ||  | | ||||||||| || ||||||| |||||||||||||||||  |||| |||||||  |||     
T  35985165 tcgagttgcacctgctgatcacgcgaacgtacgcgtatgtt-ttactctctcagtggtaatttaaacataaacttaagttgacttttctaaattctgatc 35985067  T
Q  144 agtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacac 205  Q
    | || ||||| ||||||||||||||| ||  | ||||| |||||||||||||||||||||||    
T  35985066 aatgcagtcctaatgttcttaaaggtatgtccgtctataaatcttagaagcacataacacac 35985005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 25579423 - 25579331
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtga 265  Q
    |||||| |||||||||||||| ||||| || ||||||||||| |||| ||||| ||| | | | ||||||||| |||||||||||||||||||    
T  25579423 ctcatccatgaatcttagaagtacatagcatactctccctctcggtatttctataaatgagcacccctatcagcgtctaccttaccaaggtga 25579331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 377
Target Start/End: Complemental strand, 19085849 - 19085579
Alignment:
Q  100 gtaattgaaacataaacttaagttagctttcctaaattacgataagtgtag--tcccaatgttcttaaaggtctgctcatctatgaatcttagaagcaca 197  Q
    ||||||||||||||||||||||||||  |||||||||||| | | || |    ||||||||||| |||||||   || || ||||||||||||||         
T  19085849 gtaattgaaacataaacttaagttagagttcctaaattaccaaaggtatgacttcccaatgttcctaaaggttccctaatttatgaatcttagaa----- 19085755  T
Q  198 taacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagt 297  Q
    || |||| ||| |||||  ||||||||||||| ||| | | |||||||  |||||||||||||  ||||| |||| |||||||  |  ||| ||||||||    
T  19085754 tagcacattcttcctctcagtagttctacaaatgggcagctctatcagcatctaccttaccaa--tgaaa-aagaatggagttaatgtgctgatttaagt 19085658  T
Q  298 cgtgaagtcaccta-tttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcac 377  Q
     |||||||||  || ||||||||||||||||||| ||||  | || ||  ||||||| | ||||||||||||| |||||||    
T  19085657 tgtgaagtca--tagtttccttaattactaactacttaccacctgatttcagcatatgttcatcaatattaggcatgtcac 19085579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 32448554 - 32448711
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    |||| ||||||| ||||||||||| | ||| ||| | ||||| |||||||| |||||||||||||  |||||||||||||||||  |  ||| || ||||    
T  32448554 tgaaacttagaaacacataacacattatccatctcgatagttttacaaacgagtaaccctatcagcatctaccttaccaaggtgcgaagagaatgaagtt 32448653  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttc 338  Q
      |   ||  |||| ||| ||||||||| ||| | |||||||||||||||||||||||    
T  32448654 attgaactggtttatgtcatgaagtcacttatattcttaattactaactagttacttc 32448711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 17635827 - 17635992
Alignment:
Q  175 catctatgaatcttagaagcacataacacac------tctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaac 268  Q
    |||||||||||||||| || ||||| |||||      |||| |||| |||||||||||||| ||| | | | |||||  |||||||||||||||||  |     
T  17635827 catctatgaatcttaggagtacatagcacacactctctctctctctcggtagttctacaaatgggcagcgcgatcagcatctaccttaccaaggtgtgag 17635926  T
Q  269 aagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagtta 334  Q
     ||| | ||||| |  |||  ||||||||||||||||||| | |||||||||||| ||||||||||    
T  17635927 gagaatagagttaccgggcagatttaagtcgtgaagtcacttgtttccttaattattaactagtta 17635992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 24261070 - 24261151
Alignment:
Q  177 tctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttacc 258  Q
    ||||||||||||||| | ||||| |||||| |   |||| |||||| |||||||||||| ||||||||| ||||||||||||    
T  24261070 tctatgaatcttagacgtacatagcacactttatatcttagtagttatacaaacgggtagccctatcagcgtctaccttacc 24261151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 26308184 - 26308312
Alignment:
Q  181 tgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg-tgaaacaagagtggag 278  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||  || |||||||||   | |||||||||||||| ||||| ||||  | ||    
T  26308184 tgaatcttagaaggacatcaacacactctccttcttggtagttctacaaattggcaaccctatc-tcgcctaccttaccaaggatgaaataagaaggaag 26308282  T
Q  279 ttgctaggcttatttaagtcgtgaagtcac 308  Q
    ||  | |||| ||||||||| |||||||||    
T  26308283 ttattgggctgatttaagtcatgaagtcac 26308312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 323
Target Start/End: Original strand, 15544632 - 15544770
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    ||||||||||| | ||||| |||||||||||||| ||||||   ||||||||| |  |||||||||||||| |||||||||||   |  ||| || ||||    
T  15544632 tgaatcttagagg-acatagcacactctccctctcggtagt---acaaacgggcagtcctatcagtgtctatcttaccaaggttttaggagaatgaagtt 15544727  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaatta 323  Q
     || | || ||||||||||||||||||| | ||||| ||||||    
T  15544728 acttgactgatttaagtcgtgaagtcacttgtttccctaatta 15544770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 35984957 - 35984866
Alignment:
Q  219 agttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgg--agttgctaggcttatttaagtcgtgaagtcac 308  Q
    ||||| ||||||||| ||||||||||| ||||| ||||| ||||||||| ||||||||  ||||| | |||| ||||||| | |||||||||    
T  35984957 agttcaacaaacgggcaaccctatcagcgtctatcttactaaggtgaaagaagagtggaaagttgttgggctgatttaagccatgaagtcac 35984866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 18416826 - 18416877
Alignment:
Q  285 ggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
    |||| ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  18416826 ggctgatttaagtcgtgaagtcacttgtttccataattactaactagttact 18416877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 8365337 - 8365300
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaa 115  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  8365337 gtggggtcttactctcttataggtaattgaaacataaa 8365300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 17337368 - 17337268
Alignment:
Q  173 ctcatctatgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg-tgaaacaa 270  Q
    ||||||||| ||||||||||| |||| |||| |||| |||||| |||||||||||||||||  |||| ||||   ||||||||||| |||| ||||||||    
T  17337368 ctcatctatcaatcttagaagtacatcaacatactccccctctcggtagttctacaaacggacaaccttatc-tcgtctaccttacgaaggctgaaacaa 17337270  T
Q  271 ga 272  Q
    ||    
T  17337269 ga 17337268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 18750980 - 18751017
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaa 115  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18750980 gtggggccttactctcttagaggtaattgaaacataaa 18751017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 17830427 - 17830483
Alignment:
Q  47 agttgcacgtgctgatcacac-ag-acgtacgtgtggggtcttactctcttagaggt 101  Q
    |||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||    
T  17830427 agttgcacctgctggtcacacgagtacgtacgtgtggggtcttactctcttagaggt 17830483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 24264975 - 24264927
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||||||    
T  24264975 cttggtagttctacaaacggacatccctatcagcgtctaccttaccaag 24264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 24341606 - 24341558
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||||||    
T  24341606 cttggtagttctacaaacggacatccctatcagcgtctaccttaccaag 24341558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 24167166 - 24167112
Alignment:
Q  83 gtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||  | |||||||||||||||||| ||||||||| || ||||||||||    
T  24167166 gtcttactccttcagaggtaattgaaacatagacttaagttggcattcctaaatt 24167112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 15492537 - 15492508
Alignment:
Q  82 ggtcttactctcttagaggtaattgaaaca 111  Q
    ||||||||||||||||||||||||||||||    
T  15492537 ggtcttactctcttagaggtaattgaaaca 15492508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 23031543 - 23031592
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttag 125  Q
    ||||||||||||||||| | ||||||||||||| |||| |||||| ||||    
T  23031543 gtgtggggtcttactctttcagaggtaattgaagcatatacttaaattag 23031592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 17635724 - 17635788
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||||||| |  || || | |||||||||||||||||||||||  | ||||||||||    
T  17635724 tacgtgtggggtcttaatacctcagggataattgaaacataaacttaagttgacgttcctaaatt 17635788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 23014262 - 23014226
Alignment:
Q  77 tgtggggtcttactctcttagaggtaattgaaacata 113  Q
    |||||||||||||||||| |||||||||| |||||||    
T  23014262 tgtggggtcttactctctcagaggtaattaaaacata 23014226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 26314166 - 26314230
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||| ||||||||||| |||||  || ||||||||||| |||||| || || ||||||||||    
T  26314166 tacgtgttgggtcttactcccttaggagtgattgaaacatagacttaaattggcgttcctaaatt 26314230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 24 - 378
Target Start/End: Original strand, 26810266 - 26810620
Alignment:
Q  24 ggctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagtt 123  Q
    |||||||||||||| || | || |||||||| |||||||||||  ||||||| |||||||||||||||| |||||||||||||||||||| | |||||||    
T  26810266 ggctcattcccctctagttgtcaagttgcacatgctgatcacatggacgtacatgtggggtcttactctgttagaggtaattgaaacatagaattaagtt 26810365  T
Q  124 agctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttc 223  Q
     |||||| |||| | | || | |||||||  ||| ||| ||||| ||||| ||||| ||||| ||| ||| ||||| |||| | ||||||| ||||||||    
T  26810366 ggctttcataaactcccatcaatgtagtctaaatcttcataaagttctgcccatctttgaatgttataaggacatagcacattatccctctcggtagttc 26810465  T
Q  224 tacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaatta 323  Q
    |||||||||| |  | ||||| |||||||||||||  ||||||| ||||| |||||| ||||| | ||||||||| ||||| ||| | ||| ||||||||    
T  26810466 tacaaacgggcagtcttatcaatgtctaccttaccgtggtgaaaaaagagcggagttactaggttgatttaagtcatgaaggcacatgttttcttaatta 26810565  T
Q  324 ctaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
    ||| ||| ||||||| |  || ||  | |||||||||||||||||||||||||||    
T  26810566 ctacctaattacttcctaattttactagatatacatcaatattaggtatgtcacc 26810620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 377
Target Start/End: Original strand, 17442770 - 17442973
Alignment:
Q  174 tcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagag 273  Q
    |||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||| || |     
T  17442770 tcatctatgaatcttagaagtacatagcacactcgccctctcggtagttctacaaacgggaaaccctatcagcgtctaccttaccaaggtaaaagaaaaa 17442869  T
Q  274 tggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatg 373  Q
       |||| || |||||||||||||| ||||||||||| ||| |||||||||||||||||||||   || ||  |||| || | | |||||||||||||||    
T  17442870 caaagttactgggcttatttaagtcctgaagtcacctgttttcttaattactaactagttactatctgatttcagcagatgttcgtcaatattaggtatg 17442969  T
Q  374 tcac 377  Q
    ||||    
T  17442970 tcac 17442973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 76 - 335
Target Start/End: Original strand, 34481389 - 34481649
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgt-agtcccaatgttcttaaaggtctgct 174  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| || |||||||||| | | | || | |  |||||||||| ||||||| | |     
T  34481389 gtgtggggtcttactctctcacgggtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtatgatgcccaatgttcctaaaggttttcc 34481488  T
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||| |||||||||||| || ||||| ||||   ||||||| ||||||||||||||| |||| ||||||||  | ||||||||| || |||  |  ||| |    
T  34481489 catatatgaatcttaggagtacatagcacatcatccctctcggtagttctacaaacaggtagccctatcaacgcctaccttacgaatgtgcgaggagaat 34481588  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    | ||||  | || | ||||||||| ||||||||| | ||||||||||||||||||||||||    
T  34481589 gcagttattgggttgatttaagtcatgaagtcacttgtttccttaattactaactagttac 34481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 340
Target Start/End: Complemental strand, 16787394 - 16787132
Alignment:
Q  77 tgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctca 176  Q
    ||||||||||||||| ||  | ||||||||||||||| ||||||||| |  ||| |||||| | | | || |  |  || ||||| ||||| | | | ||    
T  16787394 tgtggggtcttactccctcgggggtaattgaaacatagacttaagttggtgttcataaatttccaaaggtatcatggcagtgttcctaaagattttccca 16787295  T
Q  177 tctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgg 276  Q
     ||||||||||||| || ||||| |||| ||||| ||| ||||||| |||||||||| | ||||||||| ||||||||||||||||| | |   || ||     
T  16787294 gctatgaatcttaggagtacatagcacattctcc-tctcggtagttatacaaacgggcagccctatcagcgtctaccttaccaaggttataggtgaatga 16787196  T
Q  277 agttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttctt 340  Q
    ||||  |||||| ||||||||| ||||||||| | |||||||||||| ||||||||||| ||||    
T  16787195 agttattaggctgatttaagtcatgaagtcacttgtttccttaattaataactagttacatctt 16787132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 16113449 - 16113609
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||||||||||||||||||| || || |||||| || || | | ||||||||||||| |  ||||||||||| ||||||||||||||||||  | || | |    
T  16113449 catctatgaatcttagaagtacctagcacactttctctttcgatagttctacaaacagtcaaccctatcagcgtctaccttaccaaggtgtgagaaaaat 16113548  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    ||| ||  | || |  |||||||||| ||||||| | ||||||||||||||||||||||||    
T  16113549 ggatttattgggttgctttaagtcgtaaagtcacttgtttccttaattactaactagttac 16113609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 27117421 - 27117199
Alignment:
Q  27 tcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagc 126  Q
    |||||||||||||||| ||||||||||| || | ||||||||||           ||||||| ||||| |||||||||||||||||| |||||| || ||    
T  27117421 tcattcccctccagctgtcgagttgcacctgttaatcacacaga-----------ggtcttattctctcagaggtaattgaaacatagacttaaattggc 27117333  T
Q  127 tttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctac 226  Q
    |||| |||||| | |||| || | ||   || ||| ||||||| ||| |||||||||||||||||| |||||| |||| ||||||| |   |||||| ||    
T  27117332 tttcttaaattcccataattgaattcttgatcttcctaaaggtttgcccatctatgaatcttagaaacacatagcacattctccctttcaatagttcaac 27117233  T
Q  227 aaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    ||| ||  | |||||| || ||||||||||||||    
T  27117232 aaatggacagccctattagcgtctaccttaccaa 27117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 15299548 - 15299639
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtg 264  Q
    ||||||||||| ||||||||| ||| ||||||| ||||| || ||||||||||||||| |  ||||||||||  ||||||||||||||||||    
T  15299548 ctcatctatgagtcttagaagtacacaacacaccctcccactcggtagttctacaaacagacaaccctatcatcgtctaccttaccaaggtg 15299639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 17837901 - 17837987
Alignment:
Q  290 atttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtca 376  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| | |  ||  ||||||| | |||||||||| |||||||||    
T  17837901 atttaagtcgtgaagtcacttgtttccttaattactaactagttactacctaatttcagcatatgttcatcaatattcggtatgtca 17837987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 15812674 - 15812613
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||  || |||||||||| ||||| | ||||||||||||||||||||||||    
T  15812674 cacactctccctctctgtggttctacaaatgggtagctctatcagtgtctaccttaccaagg 15812613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 44795949 - 44796010
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||  ||||||||||||||||| || |||||||  ||||||||||||||||    
T  44795949 cacactctccctctcagtagttctacaaacgggcaatcctatcaacgtctaccttaccaagg 44796010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 17121052 - 17120964
Alignment:
Q  175 catctatgaatcttaga-agcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||||  | | |||| ||||| |||||||| |||||||||||||||| | | |||||| ||||||| |||||||||||    
T  17121052 catctatgaatcttaggtatctcatagcacaccctccctctgggtagttctacaaacgagcacccctattagtgtctgccttaccaagg 17120964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 7220763 - 7220852
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||| |||| | |||| |||||||| |||||||||||||||||| || | ||||   ||||||||||||||||||||| ||||    
T  7220763 tgaatcttagaaggacatca-acacactccctctcggtagttctacaaacgggcaagcttatc-tcgtctaccttaccaaggtgaaagaaga 7220852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 13134650 - 13134579
Alignment:
Q  173 ctcatctatgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatc 243  Q
    ||||||||||||||||||| | |||| |||| ||||||||| | |||||||||||||| ||| |||||||||    
T  13134650 ctcatctatgaatcttagatgtacatcaacatactctccctatcggtagttctacaaatgggcaaccctatc 13134579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 16360400 - 16360510
Alignment:
Q  153 ccaatgttcttaaaggtctgctcatctatgaatcttaga-agcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtcta 251  Q
    |||||||| || ||||| | | ||||||||||||||||  | | |||| |||| ||||||||| |||||||||||||||| | | | ||||||  |||||    
T  16360400 ccaatgtttttgaaggttttcccatctatgaatcttagttatctcatagcacattctccctctcggtagttctacaaacgagcagctctatcaacgtcta 16360499  T
Q  252 ccttaccaagg 262  Q
    |||||||||||    
T  16360500 ccttaccaagg 16360510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 28008705 - 28008747
Alignment:
Q  218 tagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  28008705 tagttctacaaacgggcagccctatcagtgtctaccttaccaa 28008747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 24281865 - 24281918
Alignment:
Q  208 tccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    |||| ||||||||||||||||||||| | ||||||||| |||||| ||||||||    
T  24281865 tcccccttggtagttctacaaacgggcagccctatcagcgtctacattaccaag 24281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 26648559 - 26648498
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||| || ||||||||||||||| | | ||||||| || |||||||||||||    
T  26648559 cacactctccctctcggcagttctacaaacggggagcactatcagcgtttaccttaccaagg 26648498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 33191275 - 33191319
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  33191275 gtagttctataaacgggtagccctatcagcgtctaccttaccaag 33191319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 10825435 - 10825504
Alignment:
Q  177 tctatgaatcttagaagcacataacacactctccct---cttggtagttctacaaacgggtaaccctatc 243  Q
    |||||||||||||||||  |||||||||||||| ||   ||| ||||||||||||||||  |||||||||    
T  10825435 tctatgaatcttagaagttcataacacactctctcttaccttagtagttctacaaacggacaaccctatc 10825504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 23037533 - 23037463
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    |||||| ||||||| |||||||||||||||||| | |||| | || ||||||||||| ||||||||| ||||    
T  23037533 cacactttccctctcggtagttctacaaacgggcagccctgt-agagtctaccttacgaaggtgaaagaaga 23037463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 25960670 - 25960623
Alignment:
Q  214 ttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    |||||||||||||||||  | | |||||||||||||||||||||||||    
T  25960670 ttggtagttctacaaactagcagccctatcagtgtctaccttaccaag 25960623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 13134727 - 13134689
Alignment:
Q  82 ggtcttactctcttagaggtaattgaaacataaacttaa 120  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  13134727 ggtcttactctctcagaggtaattgaagcataaacttaa 13134689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 322
Target Start/End: Complemental strand, 14240325 - 14240183
Alignment:
Q  181 tgaatcttagaagcacataa-cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagt 279  Q
    ||||||||||||| |||| | |||| ||||||||  ||||||| ||||||  || | |||||| |  |||||||||||||||||| || |||| || |||    
T  14240325 tgaatcttagaaggacatcagcacattctccctcacggtagttatacaaaaaggcagccctattaacgtctaccttaccaaggtgcaagaagaatgaagt 14240226  T
Q  280 tgctaggcttatttaagtcgtgaagtcacctatttccttaatt 322  Q
       |  ||| ||||||||| | ||||||||||||||| |||||    
T  14240225 aattgtgctgatttaagtcatcaagtcacctatttccctaatt 14240183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 21848027 - 21848072
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaactt 118  Q
    ||||||||||||||||||| || | |||||||||||||||| ||||    
T  21848027 tacgtgtggggtcttactccctcaaaggtaattgaaacatatactt 21848072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 25534330 - 25534293
Alignment:
Q  78 gtggggtcttactctcttagaggtaattgaaacataaa 115  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  25534330 gtggggtcttactctctcagagataattgaaacataaa 25534293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 80 - 381
Target Start/End: Original strand, 25939583 - 25939886
Alignment:
Q  80 ggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtag--tcccaatgttcttaaaggtctgctcat 177  Q
    |||||||||||| || | ||||||||||||||||||||||| ||||| |||||||||| | | | || | |  ||||||||||| |||||||   |||||    
T  25939583 ggggtcttactcactcaaaggtaattgaaacataaacttaaattagcattcctaaatttccaaaggtatggcctcccaatgttcctaaaggttccctcat 25939682  T
Q  178 ctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgga 277  Q
    |||||||||||| ||| |||||  ||||||||||||| |||||||||||||||||| |  |||||||| |||||||||||||||||||||  ||| ||||    
T  25939683 ctatgaatcttaaaagaacatagaacactctccctctcggtagttctacaaacggggagacctatcagcgtctaccttaccaaggtgaaaggagaatgga 25939782  T
Q  278 gttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcac 377  Q
     || || | |||||||||||| ||||||||| | ||||||||||||||||||| ||||| | |||||  |  | |||| |||||||||||||||| ||||    
T  25939783 attactggacttatttaagtcatgaagtcacatgtttccttaattactaactaattactacctggtttcaatagatatgcatcaatattaggtatatcac 25939882  T
Q  378 cacc 381  Q
    ||||    
T  25939883 cacc 25939886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 76 - 344
Target Start/End: Original strand, 45553577 - 45553846
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtc-ccaatgttcttaaaggtctgct 174  Q
    ||||| |||||||||| || |||||||||||||||||||||||||    || |||||||||| | | | || | ||  ||| ||||| ||||||| | |     
T  45553577 gtgtgtggtcttactccctcagaggtaattgaaacataaacttaatacggcgttcctaaatttccaaaggtatggtggccagtgttcctaaaggttttcc 45553676  T
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||||||||||||| ||| | ||||||||| | ||||||||||||||||  |  ||| |    
T  45553677 catctatgaatcttaggagtgcataacacactcttcctcttggtagttctacaaatgggcagccctatcagcgactaccttaccaaggtgtgaggagaat 45553776  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggtt 344  Q
    |||||| ||  ||| ||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||    
T  45553777 ggagttactgtgctgatttaagtcatgaagtcacttgtttccttaattactaactagttacatcttggtt 45553846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 73 - 378
Target Start/End: Original strand, 26291515 - 26291821
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcc-caatgttcttaaaggtct 171  Q
    ||||||||||||||||||  ||||| ||||||| |||||||||||||| ||||  |||||||||| | | | || | ||   || ||||| |||||||      
T  26291515 tacgtgtggggtcttactaccttaggggtaattaaaacataaacttaaattagagttcctaaatttccaaaggtatggtggtcagtgttcctaaaggttc 26291614  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaag 271  Q
     ||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| |  | |||||| || |||||||||||||| |||  |  ||    
T  26291615 tctcatctatgaatcttagaagtacataacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttaccaaagtgtgaggag 26291714  T
Q  272 agtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggta 371  Q
    | |||||||  | |||| ||||||||||||||||||| | ||||||||||||||||||| ||||| | || |   |||| || |  ||||||||||||||    
T  26291715 aatggagttattgggctgatttaagtcgtgaagtcacttgtttccttaattactaactaattactacatgatgtcagcaaatgtttatcaatattaggta 26291814  T
Q  372 tgtcacc 378  Q
    |||||||    
T  26291815 tgtcacc 26291821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 27418767 - 27418968
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||||||||||  |||||||||| ||| |||||  |||||| ||||||||| || ||||||| | ||||||||||||| ||||||| || |    
T  27418767 ctcatctatgaatcttagaaatacataacacattcttcctctcagtagttgtacaaacggttatccctatccgcgtctaccttaccagggtgaaagaata 27418866  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
     |||||||  | |||| ||||||||||| ||||||||| ||||||||||||||||||||||| | | || ||  |||| || | ||||||||||||||||    
T  27418867 atggagtttttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtat 27418966  T
Q  373 gt 374  Q
    ||    
T  27418967 gt 27418968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 45621469 - 45621307
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||||| |||||||| |||||| ||| ||| |||||||||||||||||||||||  ||||||||||  ||||||||||||||||||  |  ||| |    
T  45621469 catctatgaaccttagaagtacataagacaatcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaaggtgcgaggagaat 45621370  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttactt 337  Q
    | ||||  |||||| |||||||||||||||| || | ||||||||||||||||||||||||||    
T  45621369 gaagttagtaggctgatttaagtcgtgaagtaacttgtttccttaattactaactagttactt 45621307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 374
Target Start/End: Original strand, 27419913 - 27420114
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||||||||||  |||||||||| ||| |||||  |||||| ||||||||| || ||||||  | ||||||||||||| ||||||| || |    
T  27419913 ctcatctatgaatcttagaaatacataacacattcttcctctcagtagttgtacaaacggttatccctattcgcgtctaccttaccagggtgaaagaata 27420012  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
     |||||||  | |||| ||||||||||| ||||||||| ||||||||||||||||||||||| | | || ||  |||| || | ||||||||||||||||    
T  27420013 atggagtttttgggctcatttaagtcgtaaagtcacctgtttccttaattactaactagttattacctgatttcagcagattttcatcaatattaggtat 27420112  T
Q  373 gt 374  Q
    ||    
T  27420113 gt 27420114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 16075968 - 16075830
Alignment:
Q  197 ataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaag 296  Q
    |||||||||||||||||| ||||||||||||||| | || |||||||||||||||||| |||||||||  |  ||| | ||||| || ||||  ||||||    
T  16075968 ataacacactctccctctcggtagttctacaaacagatatccctatcagtgtctacctcaccaaggtgcgaggagaattgagttactgggctattttaag 16075869  T
Q  297 tcgtgaagtcacctatttccttaattactaactagttac 335  Q
    ||||||||| || | ||||||||||||||||||||||||    
T  16075868 tcgtgaagttacttgtttccttaattactaactagttac 16075830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 338
Target Start/End: Original strand, 25348567 - 25348711
Alignment:
Q  194 cacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttattt 293  Q
    |||||||||||||||||||||  ||||||||||||||| | | ||||||||| |||||||||||| ||||   |  ||| || |||| || |||| ||||    
T  25348567 cacataacacactctccctctcagtagttctacaaacgagcagccctatcagcgtctaccttaccgaggttcgaggagaatgaagttactgggctgattt 25348666  T
Q  294 aagtcgtgaagtcacctatttccttaattactaactagttacttc 338  Q
    ||||||||||||||||| | |    ||||||||||||||||||||    
T  25348667 aagtcgtgaagtcacctgtctttcaaattactaactagttacttc 25348711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 23006739 - 23006687
Alignment:
Q  210 cctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  23006739 cctcttggtagttctacaaacgggcaaccctatcagtttctaccttaccaagg 23006687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 409
Target Start/End: Complemental strand, 8502654 - 8502453
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaag 304  Q
    ||||| |||| |||||||||||||||||  ||||| |||| ||||||||||| |||||||     ||| || ||||  | |  | |||||||||||||||    
T  8502654 ctctctctctcggtagttctacaaacggacaacccaatcaatgtctaccttaacaaggtgtgcggagaatgaagttaatggattgatttaagtcgtgaag 8502555  T
Q  305 tcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacctccataagtacctttctctcagg 404  Q
    |||| | ||| ||| ||||||||||||||||||| || || | | |  ||| || |||||||||||||||   | ||||| |||||| |||||||| |||    
T  8502554 tcacatgttttcttgattactaactagttacttcatgatttttgaaggtatgcaccaatattaggtatgt---cgcctccttaagtatctttctcttagg 8502458  T
Q  405 gttct 409  Q
    |||||    
T  8502457 gttct 8502453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 21072293 - 21072158
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgt 300  Q
    |||||||| | ||| ||||||||||| ||||   | ||||||||   ||||||||||| ||||   |  ||| ||||||| ||||||| ||||||||| |    
T  21072293 cacactctgcttctcggtagttctactaacgaccagccctatcatcatctaccttaccgaggtatgaggagaatggagttactaggctgatttaagtcat 21072194  T
Q  301 gaagtcacctatttccttaattactaactagttact 336  Q
    |||||||| | |||||| ||||||||||||||||||    
T  21072193 gaagtcacttgtttcctcaattactaactagttact 21072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 41790137 - 41790083
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggta 235  Q
    ||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||    
T  41790137 tgaatcttagaagtacatagcacattctccctctcggtagttctacaaacgggta 41790083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 338
Target Start/End: Original strand, 9239763 - 9239896
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaag 304  Q
    ||||| |||| |||||||| ||||| ||| |||||||| || ||||||||||||||| |   |  | | || ||||  |||| |  ||||||||||||||    
T  9239763 ctctctctctaggtagttcaacaaatgggcaaccctattagcgtctaccttaccaagattcgaggaaaatgaagttattaggttggtttaagtcgtgaag 9239862  T
Q  305 tcacctatttccttaattactaactagttacttc 338  Q
    |||| ||||||  |||||||||||||||||||||    
T  9239863 tcacatatttctgtaattactaactagttacttc 9239896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 21078274 - 21078214
Alignment:
Q  77 tgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||||||||||| ||| | ||||||||||||||||||||||||| |  ||||||||||    
T  21078274 tgtggggtcttactccctttggggtaattgaaacataaacttaagtttgtgttcctaaatt 21078214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 24533987 - 24534035
Alignment:
Q  290 atttaagtcgtgaagtcacctatttccttaattactaactagttacttc 338  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||||    
T  24533987 atttaagtcgtgaagtcatttttttccttaattactaactagttacttc 24534035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 36357519 - 36357555
Alignment:
Q  79 tggggtcttactctcttagaggtaattgaaacataaa 115  Q
    |||||||||||||||||||||||||||||||||||||    
T  36357519 tggggtcttactctcttagaggtaattgaaacataaa 36357555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 22568190 - 22568241
Alignment:
Q  211 ctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  22568190 ctcttagtagttctacaaacgggcagccctatcagcgtctaccttaccaagg 22568241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 13777002 - 13777064
Alignment:
Q  200 acacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||||||| |||| |||||||||||||   ||||||||| ||||||||||||||||    
T  13777002 acacaatctccctctcggtatttctacaaacgggatgccctatcagcgtctaccttaccaagg 13777064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 17890546 - 17890636
Alignment:
Q  173 ctcatctatgaatcttagaagca-cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||| ||   ||||||||||||||| ||| |||| ||||||| ||||| | || |||||| ||||||||| ||||||    
T  17890546 ctcatctatgaatcttaggagtttcataacacactctccttctcggtaattctacagacgggaagccatatcagcgtctaccttgccaagg 17890636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 25887418 - 25887356
Alignment:
Q  200 acacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||| ||||| ||||| |||||||||||||  || ||||||||||| ||||||||||||||||    
T  25887418 acactctctcgctcttagtagttctacaaatcggcaaccctatcagcgtctaccttaccaagg 25887356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 19199687 - 19199626
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||| |||  ||||||||||||| ||| | ||||||||| ||||||||||||||||    
T  19199687 cacactctccttctcagtagttctacaaatgggcagccctatcagcgtctaccttaccaagg 19199626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 29031769 - 29031817
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||||||  ||||||||||  |||||||||||||||    
T  29031769 cttggtagttctacaaacggacaaccctatcaacgtctaccttaccaag 29031817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 45621537 - 45621473
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||||| ||||||||| || || ||||||||||||||| |||||| || || ||||||||||    
T  45621537 tacgtgtggagtcttactccctcaggggtaattgaaacatagacttaaattggcgttcctaaatt 45621473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 30694983 - 30694902
Alignment:
Q  181 tgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||| |||| |||| | ||||||||| ||||||| |||||||||| | ||||||   |||||||||||||||||    
T  30694983 tgaatcttagaaggacatcaacatattctccctctcggtagttatacaaacgggaagccctatgt-tgtctaccttaccaagg 30694902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 41790028 - 41789982
Alignment:
Q  292 ttaagtcgtgaagtcacctatttccttaattactaactagttacttc 338  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||||||    
T  41790028 ttaagtcatgaagtcacatgtttcattaattactaactagttacttc 41789982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 9761948 - 9761899
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||| || | ||||||||| ||||||||| ||||||    
T  9761948 cttggtagttctacaaacaggaagccctatcagcgtctaccttgccaagg 9761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 25939962 - 25939991
Alignment:
Q  349 catatatacatcaatattaggtatgtcacc 378  Q
    ||||||||||||||||||||||||||||||    
T  25939962 catatatacatcaatattaggtatgtcacc 25939991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 27418672 - 27418729
Alignment:
Q  80 ggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    |||||||||||| |  || |||||||||||||||||||||| ||||  ||||||||||    
T  27418672 ggggtcttactcgcacaggggtaattgaaacataaacttaaattagagttcctaaatt 27418729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 8446637 - 8446569
Alignment:
Q  176 atctatgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatc 243  Q
    ||||||||||||||| || |||| |||| |||||| || | |||||||||||||||||  |||||||||    
T  8446637 atctatgaatcttaggagtacatcaacatactctctctttcggtagttctacaaacggacaaccctatc 8446569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 23011267 - 23011215
Alignment:
Q  210 cctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||||| ||| | ||||||||| |||||| | |||||||    
T  23011267 cctcttggtagttctacaaatgggcagccctatcagcgtctacttcaccaagg 23011215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 26 - 378
Target Start/End: Complemental strand, 15181 - 14840
Alignment:
Q  26 ctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttag 125  Q
    ||||||||| || | |||||||||||||| ||||||||||| ||| ||| |||||||||||||||||            ||||||||| |||| | ||      
T  15181 ctcattcccatctaactttcgagttgcacctgctgatcacaaagaagtatgtgtggggtcttactct------------tgaaacatatactttaattga 15094  T
Q  126 ctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttcta 225  Q
    |||||||||||| | || |||| | |||| || ||| ||||||||||| ||| |||||||||||||| |  |||||||||||||||||| | ||||||||    
T  15093 ctttcctaaattcccatgagtgaattcccgatcttcctaaaggtctgcccatttatgaatcttagaaacttataacacactctccctctcgatagttcta 14994  T
Q  226 caaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattact 325  Q
    ||||| |  | |||||||||  ||||||||||| |||||||| ||||| | |||| |  |||| ||||| || |||||||||| | ||||||||||||||    
T  14993 caaacagtcatccctatcagcatctaccttaccgaggtgaaagaagagcgaagttacatggctgatttaggttgtgaagtcacatgtttccttaattact 14894  T
Q  326 -aactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
     ||||||| | ||| || || |||||||||| ||||||||||||||||||||||    
T  14893 caactagtgaattcctgattttagcatatatgcatcaatattaggtatgtcacc 14840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 86074 - 85887
Alignment:
Q  25 gctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagtta 124  Q
    |||||||||||| ||||| ||||| ||||| | |||||||||| ||||||||| |||||| ||||| | | | |||||||||||||||| |||||||||     
T  86074 gctcattccccttcagctgtcgagatgcacctactgatcacacggacgtacgtatggggttttactttttcataggtaattgaaacatagacttaagttg 85975  T
Q  125 gctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccct 212  Q
    || |||||||||  |||| |||||||||||||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  85974 gcattcctaaatctcgatcagtgtagtcccaatgttcttaaaggtttgcctatctatgaatcttagaagcacacaacacactctccct 85887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 81 - 337
Target Start/End: Original strand, 22526724 - 22526980
Alignment:
Q  81 gggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatcta 180  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| | || |||||||||  ||| |||||||||||  ||| |||||    
T  22526724 gggtcttactctcttagaggtaattgaaacatacacttaaattagcgttcctaaattcccattagtgtagtcataatcttcttaaaggttcgctaatcta 22526823  T
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    || |||||||||||||||||||||||||| |  |  || ||| |||||||||| | | |||||||||||||||||||||||||   |  |||  | ||||    
T  22526824 tgcatcttagaagcacataacacactctctcaatcagttgttttacaaacgggcagctctatcagtgtctaccttaccaaggttcgaggagaaggaagtt 22526923  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttactt 337  Q
     |  |||| |||||||||||||| |||| | ||||| |||||||||  |||||||||    
T  22526924 acggggctgatttaagtcgtgaaatcacatgtttccctaattactacatagttactt 22526980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 151 - 378
Target Start/End: Complemental strand, 12839367 - 12839140
Alignment:
Q  151 tcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtct 250  Q
    ||||| ||||| ||||||| | ||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||| | |||||| || ||||    
T  12839367 tcccagtgttcctaaaggtttcctcatctgtaaatcttagaagtacataacacactctccctctcggtagttctacaaacgggcatccctataagcgtct 12839268  T
Q  251 accttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagca 350  Q
    |||||||||| |||||| || | ||||||| |||||   ||||||  | | ||||||||| ||||||||||||||||||||||||| | || ||  | ||    
T  12839267 accttaccaatgtgaaagaataatggagttactaggaaaatttaaaacataaagtcacctgtttccttaattactaactagttactacatgattacaaca 12839168  T
Q  351 tatatacatcaatattaggtatgtcacc 378  Q
     || | ||||||||||||||||||||||    
T  12839167 gatgttcatcaatattaggtatgtcacc 12839140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 11520686 - 11520481
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||| ||||||||||||||| ||||||||| || ||| || |||||||||||||   ||||||||||| ||||||||||  |||||| || ||||    
T  11520686 ctcatctataaatcttagaagcacacaacacactcaccatctcggaagttctacaaacgaacaaccctatcagcgtctaccttagaaaggtgcaagaaga 11520587  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
     ||||||| || |||| ||| ||||||| ||||||  | ||||||||||||||||||| ||||| | |  ||  | ||||| |||||||||||||| |||    
T  11520586 atggagttactgggctgattgaagtcgttaagtcaattgtttccttaattactaactacttactacctaatttcaacatatttacatcaatattagttat 11520487  T
Q  373 gtcacc 378  Q
    ||||||    
T  11520486 gtcacc 11520481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 376
Target Start/End: Original strand, 5529013 - 5529186
Alignment:
Q  203 cactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtga 302  Q
    |||| ||||||| | |||||| ||||||||||| |||||| || || |||||||||||||||||| |||| |||| || || |  | ||||||||| |||    
T  5529013 cactatccctctcgctagttcaacaaacgggtagccctattagcgtttaccttaccaaggtgaaagaagaatggaattactggattgatttaagtcatga 5529112  T
Q  303 agtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtca 376  Q
    |||| ||| ||| ||||||| ||||||||||||||| |  |   ||||||||| ||||||||||||||||||||    
T  5529113 agtcgcctgtttacttaattgctaactagttacttcctaatctcagcatatatgcatcaatattaggtatgtca 5529186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 267
Target Start/End: Original strand, 9053119 - 9053305
Alignment:
Q  83 gtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtag--tcccaatgttcttaaaggtctgctcatcta 180  Q
    |||||||||| | |||||||||||||||||| |||||| ||||| ||||||||||   | | || | |  ||||||||||| |||||||    |||||||    
T  9053119 gtcttactctttaagaggtaattgaaacatagacttaaattagcgttcctaaattttcaaaggtatggcttcccaatgttcctaaaggttctttcatcta 9053218  T
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaa 267  Q
    |||  |||||| | | ||| ||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||| | |||||||    
T  9053219 tgagccttagatgtaaatagcacgctctccctcttggtagttctacaaacgggcagccctatcagcgtctaccttacaagggtgaaa 9053305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 414
Target Start/End: Complemental strand, 1833117 - 1832888
Alignment:
Q  182 gaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttg 281  Q
    ||||||| |||| ||||| |||||||||||||| | ||||| |||||||||| | ||||||||| |||||||||| |||||||  |  ||| || | ||     
T  1833117 gaatctttgaagtacatagcacactctccctctcgctagttttacaaacgggcagccctatcagcgtctaccttaacaaggtgcgaggagaatgaactta 1833018  T
Q  282 ctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacc 381  Q
    |  |||| |||||| || |||| |||||  |||| |||||||||||||||||| ||| || |||| | |  ||| || |||||||||||||||    |||    
T  1833017 catggctgatttaactcatgaattcaccagtttctttaattactaactagttaattcatgattcttgtaggtatgcaccaatattaggtatgt---aacc 1832921  T
Q  382 tccataagtacctttctctcagggttcttctct 414  Q
    ||| ||||||||||||||| |||||||| ||||    
T  1832920 tccctaagtacctttctcttagggttctgctct 1832888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 378
Target Start/End: Original strand, 10782452 - 10782652
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    ||||||||||| ||||||||| ||| || ||||||  ||  | |||||||||||||| | | |  ||||| |||||| |||| | |||||||| |||||     
T  10782452 catctatgaatattagaagcatatatcatactctctttc--gatagttctacaaacgagcagctttatcaatgtctatcttatcgaggtgaaagaagagc 10782549  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgt 374  Q
    |||||| ||  ||| ||||||||| ||||||||||| ||| |||||||||||| ||||| ||||  | || ||||| |||| |||||||||||||||||     
T  10782550 ggagttactgagctgatttaagtcatgaagtcacctgttttcttaattactaa-tagttgcttccagattttagcagatatgcatcaatattaggtatgc 10782648  T
Q  375 cacc 378  Q
    ||||    
T  10782649 cacc 10782652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 335
Target Start/End: Complemental strand, 9264666 - 9264404
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaa-tgttcttaaaggtct 171  Q
    ||||| ||||||||||||| || || | ||||||||||||| |||||| || || |||||||||| | | |  | | ||  | | ||||| ||||| | |    
T  9264666 tacgtatggggtcttactccctcagtgttaattgaaacatatacttaaattggcgttcctaaatttccaaagatatcgttgctagtgttcctaaagtttt 9264567  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaag 271  Q
     ||||||||||| ||||||||| ||||| |||| | |||||||||||||||||| ||||||| |||||||||||  | ||||| ||| ||||   |  ||    
T  9264566 tctcatctatgagtcttagaagtacatagcacattttccctcttggtagttctataaacgggcaaccctatcagcatttacctgacccaggt-cgaggag 9264468  T
Q  272 agtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    | |||||||   ||||| ||||| || |||||||||  | ||||||||||||||||||||||||    
T  9264467 aatggagttatcaggctgatttaggttgtgaagtcatttgtttccttaattactaactagttac 9264404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 378
Target Start/End: Complemental strand, 18448508 - 18448313
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagtt 280  Q
    |||||||||||||  |||| ||||||| |||||| | |||||||||||||||| | ||| |  |  ||||||||| |||||||| ||  ||| || ||||    
T  18448508 tgaatcttagaagtgcatagcacactccccctctcgatagttctacaaacgggaagcccca--aacgtctacctttccaaggtgcaaggagaatgaagtt 18448411  T
Q  281 gctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcacc 378  Q
     |  |||| ||||||||||||||||||| | |||||||| |||||||||||||||||  || || | |||  |||| | |||||||| ||||||||||    
T  18448410 accgggctaatttaagtcgtgaagtcacatgtttccttagttactaactagttacttgctgattttggcaggtataaaccaatattaagtatgtcacc 18448313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 10777733 - 10777818
Alignment:
Q  25 gctcattcccctccagctttcgagttgcacgtgctgatcacacagacgtacgtgtggggtcttactctcttagaggtaattgaaac 110  Q
    |||||||||||||||||| ||||||||||| | ||||||||||   |||||||||||||||||||||||| | | |||||||||||    
T  10777733 gctcattcccctccagctgtcgagttgcacatactgatcacacgcccgtacgtgtggggtcttactctctcatatgtaattgaaac 10777818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 13587853 - 13587974
Alignment:
Q  283 taggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacct 382  Q
    |||||| |||||||||||||||||  || ||| |||||||||||||||||||||||||| ||||  ||  ||| || |||| ||||||||||   |||||    
T  13587853 taggctgatttaagtcgtgaagtcgtctgttttcttaattactaactagttacttcttgattctgccaggtatgcaccaatgttaggtatgt---cacct 13587949  T
Q  383 ccataagtacctttctctcagggtt 407  Q
     | ||||||||||||||||| ||||    
T  13587950 acttaagtacctttctctcaaggtt 13587974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 9850960 - 9850899
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||    
T  9850960 cacactctccctctctgtagttctacaaacggacaaccctatcagtgtctaccttaccaagg 9850899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 335
Target Start/End: Complemental strand, 26115558 - 26115297
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagt-cccaatgttcttaaaggtct 171  Q
    ||||||||||||||||||| || ||||||||||||| |||  | ||||||| || ||||| |||| | | | || | ||  ||| ||||| |||||   |    
T  26115558 tacgtgtggggtcttactccctcagaggtaattgaatcattgatttaagttggcgttcctgaatttccaaaggtatggtggccagtgttcctaaag--tt 26115461  T
Q  172 gctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtg-aaacaa 270  Q
     | |||||| ||||||||| || |||||||||||||||| ||| |||||||||| ||||| | |  |||||||  |||||||||||| |||||  |  ||    
T  26115460 tcccatctaggaatcttaggagtacataacacactctccgtctcggtagttctataaacgagaagtcctatcaaagtctaccttaccgaggtgcgaggaa 26115361  T
Q  271 gagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
     | ||||||| || |||| | ||||||| ||||||||| | |||||| |||||||||||||||||    
T  26115360 aaatggagttactgggctga-ttaagtcatgaagtcacttgtttcctaaattactaactagttac 26115297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 14572406 - 14572454
Alignment:
Q  214 ttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14572406 ttggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagg 14572454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 407
Target Start/End: Original strand, 23972081 - 23972169
Alignment:
Q  316 cttaattactaactagttacttcttggttctagcatatatacatcaatattaggtatgtcaccacctccataagtacctttctctcagggtt 407  Q
    ||||||||||||||||||||||| || || | |||  ||| || |||||||||||||||   ||||||| ||||||||||||||||||||||    
T  23972081 cttaattactaactagttacttcctgattttggcaggtatgcaccaatattaggtatgt---cacctccctaagtacctttctctcagggtt 23972169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 5956528 - 5956594
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||||||| ||||||||| |||||||||||||| ||| | |||||| || ||||||||||||||||    
T  5956528 cataacacattctccctctcggtagttctacaaatgggcagccctattagcgtctaccttaccaagg 5956594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 25120748 - 25120686
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggt 263  Q
    ||||||||||||||  ||||||||||||||||| | |||||||||  ||||||||||||||||    
T  25120748 cacactctccctctcagtagttctacaaacgggcagccctatcagcatctaccttaccaaggt 25120686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 17672570 - 17672627
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  17672570 ctctcactcttagtagttctacaaacgggcagccctatcagcgtctaccttaccaagg 17672627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 4215089 - 4215022
Alignment:
Q  195 acataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||||||| ||||| ||||||||||||||| | || |||||||  ||||||||||| ||||    
T  4215089 acatagcacactctctctcttagtagttctacaaacgtgcaatcctatcaccgtctaccttactaagg 4215022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 11520784 - 11520723
Alignment:
Q  76 gtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaatt 137  Q
    ||||||||||||||||  |||  ||||||||||| |||||| ||| |||| |||||||||||    
T  11520784 gtgtggggtcttactcgtttatgggtaattgaaatataaacataaattagatttcctaaatt 11520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 20317269 - 20317220
Alignment:
Q  185 tcttagaagcacat-aacacactctccctcttggtagttctacaaacggg 233  Q
    ||||||||| |||| |||||| ||||||||||| ||||||||||||||||    
T  20317269 tcttagaaggacatcaacacattctccctcttgatagttctacaaacggg 20317220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 12462224 - 12462192
Alignment:
Q  83 gtcttactctcttagaggtaattgaaacataaa 115  Q
    |||||||||||| ||||||||||||||||||||    
T  12462224 gtcttactctctcagaggtaattgaaacataaa 12462192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 19092894 - 19092942
Alignment:
Q  213 cttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||||||||||||| | ||  ||||| |||||||||||||||    
T  19092894 cttggtagttctacaaacgggaagccacatcagcgtctaccttaccaag 19092942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 344
Target Start/End: Original strand, 2587154 - 2587422
Alignment:
Q  77 tgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataag-tgtagtcc-caatgttcttaaaggtctgct 174  Q
    ||||||||||||||| || |  ||||||||||||||||||||||||| || |||||||||| | ||||| | | ||   || ||||| |||| || |  |    
T  2587154 tgtggggtcttactccctcaatggtaattgaaacataaacttaagttggcgttcctaaatttc-ataaggtatggtggtcagtgttcctaaatgtttttt 2587252  T
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||||||||||| || ||||| ||||||||||||||  |||||||| ||||| |  ||||||||||| ||||||||||||||||||  |  ||| |    
T  2587253 catctatgaatcttaggagtacatagcacactctccctctcagtagttctccaaacagacaaccctatcagcgtctaccttaccaaggtgcgaggagaat 2587352  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggtt 344  Q
    |  ||| ||||||| ||||||||| ||||||||| | |||||||||||||||||||||||| || |||||    
T  2587353 gacgttactaggctgatttaagtcatgaagtcacttgtttccttaattactaactagttacatcctggtt 2587422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 336
Target Start/End: Original strand, 9726457 - 9726713
Alignment:
Q  80 ggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtag--tcccaatgttcttaaaggtctgctcat 177  Q
    |||||||||||| ||||| |||||||||||||||||||||| ||||  |||||||||| | | | || |    ||||| ||||| |||||||    || |    
T  9726457 ggggtcttactcgcttaggggtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcccagtgttcctaaaggttccatcgt 9726556  T
Q  178 ctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtgga 277  Q
    |||||||||||||||  |||||||||||||||  ||| | |||||||||||||||| | ||||||||| ||||||||||   |||||||| |||| ||||    
T  9726557 ctatgaatcttagaaatacataacacactctcgttctcgatagttctacaaacgggcagccctatcagcgtctacctta--taggtgaaagaagaatgga 9726654  T
Q  278 gttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
    |||  | | || | ||||||||||||||||| | ||||||||||||||| |||||||||    
T  9726655 gttcgtggtctgagttaagtcgtgaagtcacatgtttccttaattactagctagttact 9726713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 146 - 334
Target Start/End: Complemental strand, 22564548 - 22564360
Alignment:
Q  146 tgtagtcccaatgttcttaaaggtctgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcag 245  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||| ||||| | |||||| ||| ||||||||||| ||||||  || | || ||| |     
T  22564548 tgtaatcccaatgttcttaaaggtccgctcatctatgaaacttagacgcacaaagcacactttccatcttggtagttttacaaattggcagccttataat 22564449  T
Q  246 tgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagtta 334  Q
    |||| |||||||||| |||||| ||| ||||||||  |  ||| |||||||||||||| |||| | ||| |||||||| ||||||||||    
T  22564448 tgtccaccttaccaaagtgaaagaagggtggagttattgtgctgatttaagtcgtgaaatcacatgtttgcttaattaataactagtta 22564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 335
Target Start/End: Original strand, 24215984 - 24216240
Alignment:
Q  79 tggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtagtcccaatgttcttaaaggtctgctcatc 178  Q
    ||||| ||||||  ||||| ||| ||||||||||||| | ||||| |  |||||||||| | | | || || |  | |||||| ||||||| | | ||||    
T  24215984 tggggacttacttacttaggggtgattgaaacataaattaaagttggtgttcctaaatttccaaaggtataatggccatgttcctaaaggttttcacatc 24216083  T
Q  179 tatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggag 278  Q
    ||||||||||||||| ||| | ||| |||||||||| ||||||||||||||   | | |||| |||  ||||||| |||||||||| ||   || |||||    
T  24216084 tatgaatcttagaagtacacatcactctctccctctcggtagttctacaaataagaagccctgtcaacgtctaccataccaaggtgcaaggtgaatggag 24216183  T
Q  279 ttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttac 335  Q
    || ||||||  ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  24216184 ttactaggcggatttaagtcgtgatgtcacttgtttccttaattactaactagttac 24216240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 23087844 - 23087764
Alignment:
Q  181 tgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    |||||||||||||| ||||||||||||||||||| |||| || || ||||||||| || |||||| |||||||||||||||    
T  23087844 tgaatcttagaagcgcataacacactctccctctcggtatttttataaacgggtagccttatcagcgtctaccttaccaag 23087764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 22850023 - 22849956
Alignment:
Q  196 cataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggt 263  Q
    |||| |||||||||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||    
T  22850023 catagcacactctccctctcggtagttctacaaacgggcagtcctatcagtgtctaccttaccaaggt 22849956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 338
Target Start/End: Complemental strand, 22565715 - 22565555
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||||||||||| |||||  ||||| || ||||| ||||||||||||||    |||||||| || || |||||||||| |||     || |    
T  22565715 ctcatctatgaatcttagaagtacatagaacactatctctcttagtagttctacaaactatcaaccctattagcgtttaccttaccatggt----aaata 22565620  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcaccta-tttccttaattactaactagttacttc 338  Q
    |||||||| || |||| |||||||||||| |||||  || ||||||||||||||||||| |||||||    
T  22565619 gtggagttactgggctgatttaagtcgtggagtca--tagtttccttaattactaactacttacttc 22565555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 378
Target Start/End: Original strand, 14725957 - 14726162
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    |||||||||  || ||||||| |||||||||| ||| ||||| |||| ||||||||||| | | || |||||   | ||||||||||||||   |  |||    
T  14725957 ctcatctatagattttagaagtacataacacattcttcctctcggtaattctacaaacgagcagccttatcaacatttaccttaccaaggttcgaggaga 14726056  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggtat 372  Q
     |||||||  | || | |||||  |||||||||||| | ||||||||||||||||||| ||||| | || ||  |||| || | ||||||||||||||||    
T  14726057 atggagttaatgggatgatttatttcgtgaagtcacttgtttccttaattactaactacttactacctgatttcagcagatgttcatcaatattaggtat 14726156  T
Q  373 gtcacc 378  Q
    ||||||    
T  14726157 gtcacc 14726162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 23645316 - 23645116
Alignment:
Q  173 ctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaaga 272  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||| || |  |  ||||| ||||||||||| || | |||| ||      
T  23645316 ctcatctatgaatcttataagtacataacacactctctctcttagtagttctacaaacaggcagtctaatcagcgtctaccttactaaag-gaaataa-- 23645220  T
Q  273 gtggagttgctaggcttatttaagtcgtgaagtcaccta-tttccttaattactaactagttacttcttggttctagcatatatacatcaatattaggta 371  Q
     ||||||| ||||||| | |||||||||| ||| |  || |||||||||||| |||||| |||||||||| ||  |||| || |   |||||||||| ||    
T  23645219 -tggagttactaggctcaattaagtcgtggagtga--tagtttccttaattattaactacttacttcttgatttcagcagatgttactcaatattagtta 23645123  T
Q  372 tgtcacc 378  Q
    |||||||    
T  23645122 tgtcacc 23645116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 9291601 - 9291466
Alignment:
Q  201 cacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgt 300  Q
    |||||||||||||| ||||||| || |||| || | ||||||||| ||||  ||||| ||||||  |  | | |||||||  | |||| ||||||||| |    
T  9291601 cacactctccctctcggtagttatataaacaggcagccctatcagcgtctttcttactaaggtgtgaggaaaatggagttattgggctgatttaagtcat 9291502  T
Q  301 gaagtcacctatttccttaattactaactagttact 336  Q
    |||||||| | ||||||||||||| |||||||||||    
T  9291501 gaagtcacttgtttccttaattaccaactagttact 9291466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 4340324 - 4340381
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||    
T  4340324 ctctcactcttagtagttctacaaacgggaaaccctatcagcttctaccttaccaagg 4340381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 10504172 - 10504251
Alignment:
Q  181 tgaatcttagaagcacat-aacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaa 260  Q
    ||||||||||||  |||| |||||||||||||||| |||||||||||||| ||| |||||||||   ||||||||||||||    
T  10504172 tgaatcttagaaagacatcaacacactctccctctcggtagttctacaaaggggcaaccctatc-tcgtctaccttaccaa 10504251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 15466895 - 15467009
Alignment:
Q  154 caatgttcttaaaggtctgctcatctatgaatcttagaag-cacataacacactctcc-----ctcttggtagttctacaaacgggtaaccctatcagtg 247  Q
    |||||||| | ||||||| ||||| || |||||||||||  | |||| ||||||||||     ||||| || |||||||||||||| | ||||||||| |    
T  15466895 caatgttcctgaaggtcttctcatatacgaatcttagaacactcatagcacactctccttcgcctctttgttgttctacaaacgggcagccctatcagcg 15466994  T
Q  248 tctaccttaccaagg 262  Q
    |||||||||||||||    
T  15466995 tctaccttaccaagg 15467009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 22409832 - 22409786
Alignment:
Q  217 gtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggt 263  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  22409832 gtagttctacaaacgggcaactctatcagagtctaccttaccaaggt 22409786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 1635566 - 1635623
Alignment:
Q  205 ctctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    ||||| ||||| ||||||||||||||||  |||| |||||| ||||||||||||||||    
T  1635566 ctctctctcttagtagttctacaaacggacaaccatatcagcgtctaccttaccaagg 1635623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 24251787 - 24251702
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaacc-ctatcagtgtctaccttaccaag 261  Q
    ||||||||| |||||| ||  ||||||||| ||||| |||| ||||||||||||||||  |||| || |||| |||||||||||||||    
T  24251787 catctatgagtcttaggagttcataacacaatctccatcttagtagttctacaaacgg--aacctctgtcagcgtctaccttaccaag 24251702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 19245163 - 19245217
Alignment:
Q  207 ctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||| |||| |||||||||||||||| | | ||||||| |||||||||||||||    
T  19245163 ctcccccttgatagttctacaaacgggaagctctatcagcgtctaccttaccaag 19245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 8245529 - 8245569
Alignment:
Q  221 ttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    ||||||||||  | |||||||||||||||||||||||||||    
T  8245529 ttctacaaactagcaaccctatcagtgtctaccttaccaag 8245569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 9291723 - 9291675
Alignment:
Q  72 gtacgtgtggggtcttactctcttagaggtaattgaaacataaacttaa 120  Q
    |||||| |||||||||||||||| |  |||||||||||| |||||||||    
T  9291723 gtacgtatggggtcttactctctcaagggtaattgaaacttaaacttaa 9291675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 264
Target Start/End: Complemental strand, 248 - 55
Alignment:
Q  73 tacgtgtggggtcttactctcttagaggtaattgaaacataaacttaagttagctttcctaaattacgataagtgtag--tcccaatgttcttaaaggtc 170  Q
    ||||||| ||||||||||| || || |||||||||||||||||| ||| |||   ||||||||||   ||| || |    ||||| ||||| ||||| |     
T  248 tacgtgtagggtcttactcactcagtggtaattgaaacataaacataaattacaattcctaaattttcataggtatgacttcccagtgttcctaaagttt 149  T
Q  171 tgctcatctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtg 264  Q
      ||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||| | |||||| |||||||||||||||||||||    
T  148 ccctcatctatgaatcttagaagtacatagcacactccccctctcggtagttctacaaacgggaagccctattagtgtctaccttaccaaggtg 55  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 336
Target Start/End: Original strand, 4419 - 4580
Alignment:
Q  175 catctatgaatcttagaagcacataacacactctccctcttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaaggtgaaacaagagt 274  Q
    |||||||| |||||||||| ||||| |||||||||||||| |||||||||||| ||||| | |||||| ||  ||||||||| |||||||  |  ||| |    
T  4419 catctatgcatcttagaagtacatagcacactctccctctcggtagttctacacacgggcagccctattagcatctaccttatcaaggtgcgaggagaat 4518  T
Q  275 ggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagttact 336  Q
    | ||||  | |||| ||||||||| ||||||||| | |||||||||||||||||||||||||    
T  4519 gaagttattgggctgatttaagtcatgaagtcacttgtttccttaattactaactagttact 4580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 244970 - 244922
Alignment:
Q  214 ttggtagttctacaaacgggtaaccctatcagtgtctaccttaccaagg 262  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  244970 ttggtagttctacaaacgggaaaccctatcagtgtctaccttaccaagg 244922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 17612 - 17529
Alignment:
Q  251 accttaccaaggtgaaacaagagtggagttgctaggcttatttaagtcgtgaagtcacctatttccttaattactaactagtta 334  Q
    |||||||| |||||||| || || ||||||  | |||| ||||| |||| |||||||| | |||||||||||||||| ||||||    
T  17612 accttaccgaggtgaaagaaaagcggagttattgggctaatttatgtcgcgaagtcacttgtttccttaattactaaatagtta 17529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 40205 - 40248
Alignment:
Q  218 tagttctacaaacgggtaaccctatcagtgtctaccttaccaag 261  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||    
T  40205 tagttctacaaatgggcaaccctatcagcgtctaccttaccaag 40248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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