View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_40 (Length: 287)
Name: NF10602_low_40
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 4534919 - 4534660
Alignment:
| Q |
15 |
gaatccatttttgggaagaagagagaaagcattggaatggtttaacaactcatcaccaaaagcccagtaaacggcaacagctgaaggaatcgttaatgtg |
114 |
Q |
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| T |
4534919 |
gaatccatttttgggaagaagagagaaagcattggaatggtttaacaattcatcaccaaaagcccagtaaacggcaacagctgaaggaatcgttaatgtg |
4534820 |
T |
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| Q |
115 |
aaaacgtacaaagttgccagaaaatatatgtacttgaacttttgaggtttccacattgcatgcataatctctctgcaatgtaaacgtgtgtgtatgtcac |
214 |
Q |
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| T |
4534819 |
aaaacgtacaaagttgccagaaaatatatgtacttgaacttttgaggtttccacattgcatgcataatctctctgcaatgcaaacgtgtgtgtatgtcac |
4534720 |
T |
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| Q |
215 |
aatgattgttcactttataggtacaaagataatagcaatgaaaaaggatacattgaaatt |
274 |
Q |
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| T |
4534719 |
aataattgttcactttataggtacaaaaataatagcaatgaaaaaggatacattgaaatt |
4534660 |
T |
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 24628875 - 24628700
Alignment:
| Q |
17 |
atccatttttgggaagaagagagaaagcattggaatggtttaacaactcatcaccaaaagcccagtaaacggcaacagctgaaggaatcgttaatgtgaa |
116 |
Q |
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|||||||||| || || ||||||||||||||||||||||| | | ||||| ||||| ||||| ||||| ||| || |||||||||||||||||||| |
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| T |
24628875 |
atccatttttaggtaggagagagaaagcattggaatggttaagaagttcatctccaaaggcccaataaacagcagtggcagaaggaatcgttaatgtgaa |
24628776 |
T |
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| Q |
117 |
aacgtacaaagttgccagaaaatatatgtacttgaacttttgaggtttccacattgcatgcataatctctctgcaa |
192 |
Q |
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| T |
24628775 |
aacgtataaagttgccatcaaatatatgtacttgaatttttgtggcttccacatggcgtgcataatctctctgcaa |
24628700 |
T |
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