View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10602_low_42 (Length: 285)

Name: NF10602_low_42
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10602_low_42
NF10602_low_42
[»] chr3 (7 HSPs)
chr3 (19-279)||(8166253-8166516)
chr3 (121-222)||(27305608-27305711)
chr3 (111-179)||(1312940-1313011)
chr3 (126-227)||(51352036-51352139)
chr3 (50-117)||(27305519-27305586)
chr3 (182-231)||(53921464-53921513)
chr3 (127-179)||(54738887-54738939)
[»] chr7 (4 HSPs)
chr7 (122-227)||(36574415-36574522)
chr7 (111-222)||(23564947-23565063)
chr7 (50-117)||(30843286-30843354)
chr7 (52-115)||(3904275-3904338)
[»] chr8 (7 HSPs)
chr8 (121-259)||(7597746-7597886)
chr8 (50-117)||(11711805-11711873)
chr8 (48-116)||(32901987-32902056)
chr8 (50-117)||(29796131-29796198)
chr8 (121-202)||(32902079-32902161)
chr8 (121-259)||(29796220-29796357)
chr8 (121-206)||(8153970-8154057)
[»] chr2 (9 HSPs)
chr2 (121-279)||(12123483-12123644)
chr2 (124-213)||(13121942-13122033)
chr2 (159-254)||(28672067-28672164)
chr2 (49-117)||(41455210-41455279)
chr2 (144-227)||(7815194-7815280)
chr2 (49-103)||(12123392-12123447)
chr2 (159-265)||(4561209-4561315)
chr2 (147-215)||(41446314-41446383)
chr2 (123-227)||(11049716-11049823)
[»] chr4 (8 HSPs)
chr4 (113-259)||(37754852-37754997)
chr4 (111-206)||(5207728-5207825)
chr4 (121-267)||(5350031-5350179)
chr4 (121-179)||(44967724-44967782)
chr4 (158-259)||(21703770-21703873)
chr4 (50-105)||(21703693-21703748)
chr4 (144-220)||(29056528-29056606)
chr4 (124-227)||(37229622-37229727)
[»] chr5 (3 HSPs)
chr5 (120-179)||(9049245-9049304)
chr5 (118-227)||(30897575-30897686)
chr5 (74-114)||(32583116-32583156)
[»] chr1 (6 HSPs)
chr1 (50-104)||(37282498-37282552)
chr1 (123-179)||(37282590-37282646)
chr1 (50-103)||(3461007-3461060)
chr1 (52-116)||(15820596-15820659)
chr1 (49-81)||(16455953-16455985)
chr1 (49-105)||(45655467-45655523)
[»] chr6 (1 HSPs)
chr6 (68-115)||(30683713-30683760)
[»] scaffold0219 (1 HSPs)
scaffold0219 (148-259)||(27366-27479)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 8166253 - 8166516
Alignment:
Q  19 tacataacaacaattcttgaatt-atattatttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  8166253 tacataacaacaattcttgaatttatattatttgttgtgaattaggactcaaaattacaccaataaacttagacctgtggagcaaaaagaagtagtaatc 8166352  T
Q  118 tcaaacaacaacaa---tgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatgcaaaagataaatagagaagaaaaactaacacac 214  Q
    ||||||||||||||   ||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||    
T  8166353 tcaaacaacaacaacaatgacaaacttagatctaatctaggaat-aagtgtaaaacacaaaatcatgcaaaagataactagagaagaaaaactaacgcac 8166451  T
Q  215 taagaaatatttatccaactaggtctaacaatgacctactttgggaagagagaaatctctgcttc 279  Q
    |||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  8166452 taagaaatgtttacccaattaggtctaacaatgacctactttggggagagagaaatctccgcttc 8166516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 27305608 - 27305711
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatg--caaaagataaatagagaagaaaaactaacacactaag 218  Q
    |||||||||||| || ||| || ||||||||||| | | ||||| ||||||||||||||    |||||||||||||||||||| |||| ||||||| |||    
T  27305608 aacaacaacaataaccaacctagatctaatctaggagtaaagtgaaaaacacaaaaccacaaacaaaagataaatagagaagagaaacaaacacacaaag 27305707  T
Q  219 aaat 222  Q
    ||||    
T  27305708 aaat 27305711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 1312940 - 1313011
Alignment:
Q  111 agtaacctcaaacaacaac---aatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 179  Q
    |||||| ||||||||||||   ||| ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  1312940 agtaacatcaaacaacaacgataataacaaacttagatctaatctagaaaccaagtgtaaaacaccaaacca 1313011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 51352036 - 51352139
Alignment:
Q  126 caacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaaata 223  Q
    ||||||| |||||| || ||||||||||| |||||| || ||||||||||||  || | |||||||||| |||||||| |||| ||||||  |||||||     
T  51352036 caacaataacaaacctagatctaatctaggaatcaaatgaaaaacacaaaaccacaagtaaaagataaagagagaagagaaacaaacacatcaagaaatg 51352135  T
Q  224 ttta 227  Q
    ||||    
T  51352136 ttta 51352139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 27305519 - 27305586
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 117  Q
    ||||||||||| ||||||||||| ||||||||||| |  || ||||||||||||   |||||||||||    
T  27305519 tgttgtgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaaggaaagtagtaacc 27305586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 53921464 - 53921513
Alignment:
Q  182 caaaagataaatagagaagaaaaactaacacactaagaaatatttatcca 231  Q
    ||||| ||||| |||||||| |||| ||||||||||||||| ||||||||    
T  53921464 caaaatataaagagagaagagaaacaaacacactaagaaatgtttatcca 53921513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 54738887 - 54738939
Alignment:
Q  127 aacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 179  Q
    |||||| |||||||||||| |||||||||||||||| |  || ||||||||||    
T  54738887 aacaataacaaacttaaatttaatctagaaatcaagggagaagcacaaaacca 54738939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 36574415 - 36574522
Alignment:
Q  122 acaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaaga 219  Q
    ||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||  || | |||||||||| ||||||||||||| ||||||  ||||    
T  36574415 acaacaacaataacaaacttagatctaatctaggaatcaagtgaaaaacacaaaaccacaagaaaaagataaagagagaagaaaaacaaacacatcaaga 36574514  T
Q  220 aatattta 227  Q
    ||| ||||    
T  36574515 aatgttta 36574522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 23564947 - 23565063
Alignment:
Q  111 agtaacctcaaacaacaacaatgacaaa-cttaaatctaatctagaaatcaa-gtgtaaaacacaaaacc---atgcaaaagataaatagagaagaaaaa 205  Q
    ||||||| ||| |||||||||| ||||| | || |||||||||||||||||| ||| ||| ||||||| |   | ||||||||||||||||||||| |||    
T  23564947 agtaaccacaagcaacaacaataacaaaacctagatctaatctagaaatcaaagtgaaaatcacaaaaaccacaagcaaaagataaatagagaagagaaa 23565046  T
Q  206 ctaacacactaagaaat 222  Q
    | ||||||| |||||||    
T  23565047 caaacacaccaagaaat 23565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 30843286 - 30843354
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 117  Q
    |||||||||||  || ||||||| ||||||||||| ||||| ||||||||||||| | |||||||||||    
T  30843286 tgttgtgaattcagaatcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaacc 30843354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 3904275 - 3904338
Alignment:
Q  52 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 115  Q
    ||||||||| | ||||||||| ||||| ||||||||||| |||||||| |||| || |||||||    
T  3904275 ttgtgaatttgaactcaaaatgacacctataaatttagatgtgtggagtaaaaggaggtagtaa 3904338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 259
Target Start/End: Complemental strand, 7597886 - 7597746
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaacacactaag 218  Q
    |||| ||||||| ||||||||| ||||||| ||| || ||||||||||||||||||| ||   ||||||||||| |||||||| ||||   ||||  ||     
T  7597886 aacaccaacaataacaaacttagatctaatttaggaaccaagtgtaaaacacaaaacgataaacaaaagataaagagagaagagaaacacgcacatcaat 7597787  T
Q  219 aaatatttatccaactaggtctaacaatgacctactttggg 259  Q
    |||||||||||||  | ||||||||||||||||||| ||||    
T  7597786 aaatatttatccagttcggtctaacaatgacctactatggg 7597746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 11711805 - 11711873
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaag-aagtagtaacc 117  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||    
T  11711805 tgttgtgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaacc 11711873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 32901987 - 32902056
Alignment:
Q  48 tttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa-agaagtagtaac 116  Q
    ||||||||||||| ||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||||||    
T  32901987 tttgttgtgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaac 32902056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 29796131 - 29796198
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 117  Q
    |||||||||||  ||||||| || |||||||||||||| || ||||||||||||| |||||| |||||    
T  29796131 tgttgtgaattcagactcaacatcacaccaataaattttgatgtgtggagcaaaaggaagtaataacc 29796198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 32902079 - 32902161
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacc--atgcaaaagataaatagagaagaa 202  Q
    |||||||||||  |||||| || ||||||||||| || |||||| |||||||||||||  | |||||||||||| |||||||||    
T  32902079 aacaacaacaacaacaaacctagatctaatctaggaaccaagtgaaaaacacaaaaccaaaagcaaaagataaa-agagaagaa 32902161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 29796220 - 29796357
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaacacactaag 218  Q
    |||||||| ||| |||| |||| || |||||||| ||| ||||||||| ||||||| |||  |||||||||||| |||||||| |||| ||||||| ||     
T  29796220 aacaacaataataacaatcttagatttaatctagtaattaagtgtaaagcacaaaatcataagcaaaagataaa-agagaagataaac-aacacaccaa- 29796316  T
Q  219 aaatatttatccaactaggtctaacaatgacctactttggg 259  Q
    |||| |||| | |  | |||| ||||||||||||| |||||    
T  29796317 aaatgtttaccaagttcggtccaacaatgacctacattggg 29796357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 8154057 - 8153970
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaac 206  Q
    |||||||| ||| |||||| || || |||||||| ||| ||||| |||||||||||   ||||||||||||||| | |||||| ||||    
T  8154057 aacaacaataataacaaacctagatgtaatctaggaataaagtgaaaaacacaaaattacatgcaaaagataaacaaagaagagaaac 8153970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 279
Target Start/End: Original strand, 12123483 - 12123644
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaactaacacactaag 218  Q
    |||||||||||| |||||| || ||||||||||||||||||||| |||| ||||||   || |||||||||||| ||| |||| |||| ||||| | |||    
T  12123483 aacaacaacaataacaaacctatatctaatctagaaatcaagtgaaaaatacaaaatcacaagcaaaagataaagagataagagaaacaaacacgccaag 12123582  T
Q  219 aaatatttatccaactaggtctaacaatgacctactttgg-gaagagagaaatctctgcttc 279  Q
    |||||||||  ||  | |||| ||||||||| |||| ||| ||| |||||  ||||||||||    
T  12123583 aaatatttactcagttcggtccaacaatgacttactctggagaaaagagatttctctgcttc 12123644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 13122033 - 13121942
Alignment:
Q  124 aacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacaca 213  Q
    ||||||||| |||||| || || |||||||||||||||||| |||||| |||||  || |||||||||||| |||||||| |||| ||||||    
T  13122033 aacaacaataacaaacctagatgtaatctagaaatcaagtgaaaaacataaaaccacaagcaaaagataaagagagaagagaaacaaacaca 13121942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 28672164 - 28672067
Alignment:
Q  159 caagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaacacactaagaaatatttatccaactaggtctaacaatgacctact 254  Q
    |||||||||||||||||| ||   ||||| |||||| |||||||| |||| ||||||| |||| ||||||| | || | |||| ||||||||||||||    
T  28672164 caagtgtaaaacacaaaatcacaagcaaaggataaagagagaagagaaacaaacacacaaagatatatttacctaattcggtccaacaatgacctact 28672067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 41455279 - 41455210
Alignment:
Q  49 ttgttgtgaattaggactcaaaatt-acaccaataaatttagacgtgtggagcaaaaagaagtagtaacc 117  Q
    ||||||||||||  ||||||||| | ||| ||||||| |||||| |||||||||||| ||||||||||||    
T  41455279 ttgttgtgaattcagactcaaaactcacaacaataaacttagacatgtggagcaaaaggaagtagtaacc 41455210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 7815194 - 7815280
Alignment:
Q  144 atctaatctagaaatcaagtgtaaaa-cacaaaacc--atgcaaaagataaatagagaagaaaaactaacacactaagaaatattta 227  Q
    ||||||||||| ||||||||| |||| ||||||| |  | |||||||||||| | |||||| |||| ||||||| ||||||||||||    
T  7815194 atctaatctaggaatcaagtgaaaaaacacaaaatcgcaagcaaaagataaagaaagaagagaaacaaacacaccaagaaatattta 7815280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 12123392 - 12123447
Alignment:
Q  49 ttgttgtgaattaggactcaaaa-ttacaccaataaatttagacgtgtggagcaaa 103  Q
    |||||||||||| |||||||||| ||||||| ||||||||| | ||||||||||||    
T  12123392 ttgttgtgaatttggactcaaaaattacacctataaatttatatgtgtggagcaaa 12123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 4561315 - 4561209
Alignment:
Q  159 caagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaaatatttatccaactaggtctaacaatgacctacttt 256  Q
    |||||||||||||||||||  || ||||||||||||||||||| | |||  ||||||| ||||||| ||||||||  | |||  ||||||||| |||| |    
T  4561315 caagtgtaaaacacaaaaccacaagcaaaagataaatagagaa-agaaagaaacacac-aagaaatgtttatccagtttggtacaacaatgacatactct 4561218  T
Q  257 gggaagaga 265  Q
     ||||||||    
T  4561217 aggaagaga 4561209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 41446383 - 41446314
Alignment:
Q  147 taatctagaaatcaagtgtaaaacacaaaac-catgcaaaagataaatagagaagaaaaactaacacact 215  Q
    |||||||| || ||||| ||||||||||| | || |||||||||||| |||||||| |||| ||||||||    
T  41446383 taatctagtaaccaagtataaaacacaaaccacaagcaaaagataaagagagaagagaaacaaacacact 41446314  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 11049823 - 11049716
Alignment:
Q  123 caacaacaatgacaaacttaaatctaatctagaaatc-aagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaaga 219  Q
    |||||||||| | |||| || ||||||||||| |||| ||||| |||  |||||||  || |||||| ||||| |||||||| |||| ||||||| ||||    
T  11049823 caacaacaataataaacctagatctaatctaggaatcaaagtgaaaagtacaaaaccacaagcaaaatataaagagagaagagaaacaaacacacaaaga 11049724  T
Q  220 aatattta 227  Q
    ||| ||||    
T  11049723 aatgttta 11049716  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 259
Target Start/End: Original strand, 37754852 - 37754997
Alignment:
Q  113 taacctcaaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccatg--caaaagataaatagagaagaaaaactaac 210  Q
    ||||||||| |||||||||   || || || |||||||||||  ||||||| |||| | ||||||||    || |||||||| ||||||||||||| |||    
T  37754852 taacctcaagcaacaacaa---cagacctagatctaatctagggatcaagtataaagcccaaaaccacaaacataagataaagagagaagaaaaacaaac 37754948  T
Q  211 acactaagaaatatttatccaactaggtctaacaatgacctactttggg 259  Q
    |||||||||||||||||||||  |  |||||||||| ||||||| ||||    
T  37754949 acactaagaaatatttatccagtttagtctaacaattacctactatggg 37754997  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 5207728 - 5207825
Alignment:
Q  111 agtaacctcaaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaac 206  Q
    ||||||||||| ||||||||||  ||||| || ||||||| ||| ||||||||| ||| ||||||||  ||||||| |||||||||||||||| ||||    
T  5207728 agtaacctcaagcaacaacaatatcaaacctagatctaatttaggaatcaagtgaaaagcacaaaaccacatgcaacagataaatagagaagagaaac 5207825  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 267
Target Start/End: Complemental strand, 5350179 - 5350031
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaag 218  Q
    |||||||||||| |||||| || |||| ||  || ||||||||| ||||||||| ||  ||  ||||||||||  |||||||| |||| ||||||| ||     
T  5350179 aacaacaacaataacaaacctagatctcatacaggaatcaagtgaaaaacacaagactacaaacaaaagataacgagagaagagaaacaaacacaccaat 5350080  T
Q  219 aaatatttatccaactaggtctaacaatgacctactttgggaagagaga 267  Q
    |||| |||| |||| |  ||| |||||||||||||| |||| |||||||    
T  5350079 aaatgtttacccaattcagtccaacaatgacctactctggggagagaga 5350031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 44967724 - 44967782
Alignment:
Q  121 aacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 179  Q
    |||||||||| | | |||| || |||||||||| |||||||||||||||||||||||||    
T  44967724 aacaacaacactaataaacatatatctaatctaaaaatcaagtgtaaaacacaaaacca 44967782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 21703770 - 21703873
Alignment:
Q  158 tcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaacacactaagaaatatttatccaactaggtctaacaatgacctactt 255  Q
    ||||||||||||||||||| ||   |||||| ||||| |||||||| |||| ||||||  ||||||| |||| |||  | |||| ||||||||||||||     
T  21703770 tcaagtgtaaaacacaaaatcacaagcaaaatataaagagagaagagaaacaaacacatcaagaaatgtttacccagttcggtcaaacaatgacctacta 21703869  T
Q  256 tggg 259  Q
    ||||    
T  21703870 tggg 21703873  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 21703693 - 21703748
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 105  Q
    ||||||||||| | ||||||||| ||| ||||||| ||||| ||||||||||||||    
T  21703693 tgttgtgaattcgaactcaaaatcacagcaataaacttagatgtgtggagcaaaaa 21703748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 29056606 - 29056528
Alignment:
Q  144 atctaatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaa 220  Q
    ||||||||||| ||||||||| ||||||||||||  ||  ||||||||||| ||| |||| |||| ||||||| |||||    
T  29056606 atctaatctaggaatcaagtgaaaaacacaaaaccacaaacaaaagataaagagaaaagagaaacaaacacaccaagaa 29056528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 37229622 - 37229727
Alignment:
Q  124 aacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaaccat--gcaaaagataaatagagaagaaaaactaacacactaagaaa 221  Q
    ||||||||| || ||| || ||||||| ||| ||| ||||| ||| |||||||||||  | |||||||||| |||||||| |||| ||||| | ||||||    
T  37229622 aacaacaataaccaacctagatctaatttaggaataaagtgaaaagcacaaaaccataagtaaaagataaagagagaagagaaacaaacacgccaagaaa 37229721  T
Q  222 tattta 227  Q
    | ||||    
T  37229722 tgttta 37229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 9049245 - 9049304
Alignment:
Q  120 aaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 179  Q
    ||||||||||||| |||||  |||||||||| ||||||| ||||| ||||||||||||||    
T  9049245 aaacaacaacaataacaaatctaaatctaatatagaaattaagtgaaaaacacaaaacca 9049304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 30897686 - 30897575
Alignment:
Q  118 tcaaacaacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaa--ccatgcaaaagataaatagagaagaaaaactaacacact 215  Q
    |||| |||||||||| ||| ||||||||||||||||| || |||||||||| || ||||   || |||||||||| | ||| || | |||| |||||||     
T  30897686 tcaagcaacaacaataacagacttaaatctaatctaggaaccaagtgtaaagcataaaatcacaagcaaaagatagagagaaaacagaaacaaacacacc 30897587  T
Q  216 aagaaatattta 227  Q
    ||||||| ||||    
T  30897586 aagaaatgttta 30897575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 32583116 - 32583156
Alignment:
Q  74 acaccaataaatttagacgtgtggagcaaaaagaagtagta 114  Q
    |||| ||| |||||||| |||||||||||||||||||||||    
T  32583116 acactaattaatttagatgtgtggagcaaaaagaagtagta 32583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 37282498 - 37282552
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaa 104  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | |||||||||||||    
T  37282498 tgttgtgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaa 37282552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 37282590 - 37282646
Alignment:
Q  123 caacaacaatgacaaacttaaatctaatctagaaatcaagtgtaaaacacaaaacca 179  Q
    |||||||||| |||||| || ||||||||||||||||| ||| ||||| ||||||||    
T  37282590 caacaacaataacaaacctagatctaatctagaaatcaggtgaaaaacgcaaaacca 37282646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 3461060 - 3461007
Alignment:
Q  50 tgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaa 103  Q
    |||| ||||||  |||||||||||||||| ||||||||||| | ||||||||||    
T  3461060 tgttttgaattcagactcaaaattacacccataaatttagatgcgtggagcaaa 3461007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 15820659 - 15820596
Alignment:
Q  52 ttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaac 116  Q
    ||||||||| |||||||||| | |||||||||| ||||| ||||||||||||   ||||||||||    
T  15820659 ttgtgaattcggactcaaaact-caccaataaacttagatgtgtggagcaaaggaaagtagtaac 15820596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 16455985 - 16455953
Alignment:
Q  49 ttgttgtgaattaggactcaaaattacaccaat 81  Q
    |||||||||||| ||||||||||||||||||||    
T  16455985 ttgttgtgaattcggactcaaaattacaccaat 16455953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 45655467 - 45655523
Alignment:
Q  49 ttgttgtgaattaggactcaaaattacaccaataaatttagacgtgtggagcaaaaa 105  Q
    |||||| ||||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||    
T  45655467 ttgttgcgaattcggacttaaaatcacatcaataaacttagatgtgtggagcaaaaa 45655523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 30683713 - 30683760
Alignment:
Q  68 aaaattacaccaataaatttagacgtgtggagcaaaaagaagtagtaa 115  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  30683713 aaaatcacacccataaatttagatgtgtggagcaaaaaaaagtagtaa 30683760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 27366 - 27479
Alignment:
Q  148 aatctagaaatcaagtgtaaaacacaaaac--catgcaaaagataaatagagaagaaaaactaacacactaagaaatatttatccaactaggtctaacaa 245  Q
    ||||||| ||||||||| ||||||||||||  || ||||||| |||| |||||||| |||  ||||||  || |||| |||| | || | |||| |||||    
T  27366 aatctaggaatcaagtgaaaaacacaaaaccacaagcaaaaggtaaagagagaagagaaataaacacatcaataaatgtttacctaattcggtccaacaa 27465  T
Q  246 tgacctactttggg 259  Q
    ||||||||| ||||    
T  27466 tgacctactatggg 27479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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