View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_46 (Length: 272)
Name: NF10602_low_46
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 1608352 - 1608105
Alignment:
| Q |
18 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608352 |
agattggtggtgcaatttaacaccacatccaaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
1608253 |
T |
|
| Q |
118 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1608252 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcatttgtgcataaaacgg |
1608153 |
T |
|
| Q |
218 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608152 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
1608105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 1631842 - 1631595
Alignment:
| Q |
18 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631842 |
agattggtggtgcaatttaacaccacatccaaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
1631743 |
T |
|
| Q |
118 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631742 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagcaaattctcaacaacaacaaaactcattggtgcataaaacgg |
1631643 |
T |
|
| Q |
218 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1631642 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
1631595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 1625359 - 1625112
Alignment:
| Q |
18 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625359 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
1625260 |
T |
|
| Q |
118 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacgg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
1625259 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagacaattctcaacaacaacaaaactcatcggtgcataaaacgg |
1625160 |
T |
|
| Q |
218 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
265 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1625159 |
ttcatggtgattgtttgaagctagttgaaaacacaatttttcatctca |
1625112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 10818703 - 10818947
Alignment:
| Q |
18 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10818703 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagaattgaattcagg |
10818802 |
T |
|
| Q |
118 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |
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| T |
10818803 |
gaaatgcttgttcaattagccttaaaccaagctcttaccatgcaaaaagaagcacatgaaaattct---caacaacaaaactcatcggtgcataaaacgg |
10818899 |
T |
|
| Q |
218 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
265 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
10818900 |
ttcatggtgattgtttgaagctatatgaaaatacaatttttcatctca |
10818947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 18786300 - 18786053
Alignment:
| Q |
18 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcatttcaaaatcaaacatagagttgaattcagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18786300 |
agattggtggtgcaatttaacaccacatcctaagccatgcaaacactacacaacacaaatgaacaatcacttcaaaatcaaacatagagttgaattcagg |
18786201 |
T |
|
| Q |
118 |
gaaatgcttgttcaattagccttaaaacaagctcttaccatgcaaaaagaagcacaagaaaattctcaacaacaacaaaactcattggtgcataaaacgg |
217 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
18786200 |
gaaatgcttgttaaattagccttaaaccaagctcttaccatgcaaaaagaagcacaagataattctcaacaacaacaaaactcatccgtgcataaaacgg |
18786101 |
T |
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| Q |
218 |
ttcatggtgattgtttgaagctatttgaaaacacaatttttcatctca |
265 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18786100 |
ttcatgctgattgtttcaagctatttgaaaacacaatttttcatctca |
18786053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 10144758 - 10144721
Alignment:
| Q |
205 |
gtgcataaaacggttcatggtgattgtttgaagctatt |
242 |
Q |
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|||||| ||||||||||| ||||||||||||||||||| |
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| T |
10144758 |
gtgcatgaaacggttcatcgtgattgtttgaagctatt |
10144721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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