View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_49 (Length: 265)
Name: NF10602_low_49
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 43199814 - 43199560
Alignment:
| Q |
7 |
gagatgaaaaggcagattttagatggcatgtgtaaacgtgatttgcttaatggagcagccactatgatgaagagtctgtttagtttctcatgatacatag |
106 |
Q |
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| T |
43199814 |
gagatgaaaaggcagattttagatggcatgtgtaaacgtgattttcttaatggagcagccactatgatgaagagtctgtttagtttctcatgatacatag |
43199715 |
T |
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| Q |
107 |
agcatttagtggagcaataaatttaatcgtagaaattcacattaaaacaatcgttgtcttcatcagtacctatttgtctctttacctttccatatagttt |
206 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
43199714 |
agcatttagtggagcaataaatttaattgtagaaattcacattaaaacaatcgttgtcttcatcattatctatttgtctttttacctttccatatagttt |
43199615 |
T |
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| Q |
207 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43199614 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
43199560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 11220095 - 11220348
Alignment:
| Q |
7 |
gagatgaaaaggcagattttagatggcatgtgtaaacgtgatttgcttaatggagcagccactatgatgaagagtctgtttagtttctcatgatacatag |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
11220095 |
gagatgaaaaggtagattttagatggcatgtgtaaacgtgatgtgctta-tggagcagccactgtcataaagagtctgtttagtttctcatgatacatag |
11220193 |
T |
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| Q |
107 |
agcatttagtggagcaataaatttaatcgtagaaattcacattaaaacaatcgttgtcttcatcagtacctatttgtctctttacctttccatatagttt |
206 |
Q |
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| T |
11220194 |
agcatttagtggagcaataaatttaattgtagaaattcacattaaaacaatcgttgtcttcatcaatagctatttgtctatttacctttccatatagttt |
11220293 |
T |
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| Q |
207 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11220294 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
11220348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 11230592 - 11230845
Alignment:
| Q |
7 |
gagatgaaaaggcagattttagatggcatgtgtaaacgtgatttgcttaatggagcagccactatgatgaagagtctgtttagtttctcatgatacatag |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
11230592 |
gagatgaaaaggtagattttagatggcatgtgtaaacgtgatgtgctta-tggagcagccactgtcataaagagtctgtttagtttctcatgatacatag |
11230690 |
T |
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| Q |
107 |
agcatttagtggagcaataaatttaatcgtagaaattcacattaaaacaatcgttgtcttcatcagtacctatttgtctctttacctttccatatagttt |
206 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
11230691 |
agcatttagtggagcaataaatttaattgtagaaattcacattaaaacaatcgttgtcttcatcaatagctatttgtctatttacctttccatatagttt |
11230790 |
T |
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| Q |
207 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11230791 |
tatcacattggaagacactaagttaactttttaaatgagtagcaaaggtatgttt |
11230845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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