View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10602_low_5 (Length: 413)
Name: NF10602_low_5
Description: NF10602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10602_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 40079391 - 40079052
Alignment:
| Q |
23 |
gtgtgcatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgca |
122 |
Q |
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| T |
40079391 |
gtgtacatcaaacatttccttttgagatagacaagaggtacacataagagatggaaatggatacatgtaattaaggttagcagcaaacttcgttcctgca |
40079292 |
T |
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| Q |
123 |
acgtcaacaacataacaaacacatgcatatttttataacgaaatgcgtgaaaaattggtaacggtatgcacataaagtgggagttatagcacctatatag |
222 |
Q |
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| T |
40079291 |
acgtcaacaacataacaaacacatgcatatttttattacgaaatgcgtgaaaaattggtaacggtatgcacataaaatgggagttaaagcacctatatag |
40079192 |
T |
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| Q |
223 |
aatagaacnnnnnnncttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaa |
322 |
Q |
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| T |
40079191 |
aatagaacaaaaaaacttaaataactgataaataattgttatgttacaattagacatgtattttgtcaatcttttgttatattcttgcccaacaatgaaa |
40079092 |
T |
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| Q |
323 |
agttggttttttcttcttcaaaataacatgattaaacatg |
362 |
Q |
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| T |
40079091 |
agttggtttcttcttcttcaaaataacatgattaaacatg |
40079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 40079032 - 40078996
Alignment:
| Q |
372 |
cacaaaaatatgtggtatattattggcctttgcttct |
408 |
Q |
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| T |
40079032 |
cacaaaaatatgtggtatattattggcctttggttct |
40078996 |
T |
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